SMTL ID : 4bgd.1

Crystal structure of Brr2 in complex with the Jab1/MPN domain of Prp8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 13 residues within 4Å: Chain A: F.904, T.906, F.907, N.908, Q.911, G.930, K.931, G.932, T.933, G.934, K.935, T.936 Ligands: MG.2 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.908, A:Q.911, A:Q.911, A:G.932, A:T.933, A:G.934, A:K.935, A:T.936 Water bridges: A:K.935, A:T.936, A:D.1034, A:D.1034 Salt bridges: A:K.935 pi-Stacking: A:F.904, A:F.904

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: D.1033, D.1034 Ligands: ADP.1 No protein-ligand interaction detected (PLIP)

1 x PE5: 3,6,9,12,15,18,21,24-OCTAOXAHEXACOSAN-1-OL(Non-covalent)

PE5.3: 7 residues within 4Å: Chain A: D.33, K.64, Y.236, L.250, F.251, Y.252, Q.464 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, T.H.D. et al., Structural Basis of Brr2-Prp8 Interactions and Implications for U5 Snrnp Biogenesis and the Spliceosome Active Site. Structure (2013)

Release Date

2013-05-29

Peptides

PRE-MRNA-SPLICING HELICASE BRR2: A
PRE-MRNA-SPLICING FACTOR 8: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

PRE-MRNA-SPLICING HELICASE BRR2

PRE-MRNA-SPLICING FACTOR 8