SMTL ID : 4bge.3 (2 other biounits)

Crystal structure of InhA(S94A) mutant in complex with pyridomycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-tetramer

Ligands

4 x PYW: Pyridomycin(Non-covalent)

PYW.1: 18 residues within 4Å: Chain A: I.21, A.94, I.95, G.96, M.103, M.147, D.148, F.149, A.157, Y.158, M.161, K.165, A.191, G.192, P.193, I.194, I.215, L.218 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.21, A:M.147, A:F.149, A:F.149, A:A.157, A:Y.158, A:I.215, A:L.218 Hydrogen bonds: A:Y.158, A:K.165, A:I.194, A:I.194 PYW.2: 15 residues within 4Å: Chain B: I.21, A.94, I.95, G.96, M.103, M.147, D.148, F.149, Y.158, M.161, K.165, G.192, P.193, I.194, I.215 9 PLIP interactions: 9 interactions with chain B Hydrophobic interactions: B:I.21, B:M.147, B:F.149, B:Y.158, B:I.194, B:I.215 Hydrogen bonds: B:K.165, B:I.194, B:I.194 PYW.3: 15 residues within 4Å: Chain C: I.21, A.94, I.95, G.96, M.103, M.147, D.148, F.149, Y.158, M.161, K.165, G.192, P.193, I.194, I.215 10 PLIP interactions: 10 interactions with chain C Hydrophobic interactions: C:I.21, C:M.147, C:F.149, C:F.149, C:Y.158, C:I.215 Hydrogen bonds: C:Y.158, C:K.165, C:I.194, C:I.194 PYW.4: 18 residues within 4Å: Chain D: I.21, A.94, I.95, G.96, M.103, M.147, D.148, F.149, A.157, Y.158, M.161, K.165, A.191, G.192, P.193, I.194, M.199, I.202 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:I.21, D:M.147, D:F.149, D:A.157, D:Y.158, D:I.202 Hydrogen bonds: D:Y.158, D:K.165, D:I.194, D:I.194 Water bridges: D:I.194, D:T.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hartkoorn, R.C. et al., Pyridomycin bridges the NADH- and substrate-binding pockets of the enoyl reductase InhA. Nat. Chem. Biol. (2014)

Release Date

2013-12-04

Peptides

Enoyl-[acyl-carrier-protein] reductase [NADH]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

C
E

D
F

Enoyl-[acyl-carrier-protein] reductase [NADH]

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