SMTL ID : 4bhx.1 (1 other biounit)

Crystal structure of the SCAN domain from human paternally expressed gene 3 protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 3 residues within 4Å: Chain A: R.14, Q.57, T.60 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.57 Water bridges: A:T.60, A:T.60 PEG.2: 8 residues within 4Å: Chain A: H.10, W.38, L.52, L.55, E.56, L.59 Ligands: EDO.14, EDO.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.38 PEG.3: 6 residues within 4Å: Chain A: Y.18, E.20, F.21, V.22, G.23, P.24 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.18, A:Y.18

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.4: 4 residues within 4Å: Chain A: Q.40, T.43, R.44, E.48 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.40, A:R.44, A:R.44 Water bridges: A:S.6

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 3 residues within 4Å: Chain A: L.59, I.62, K.67 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.67, A:R.71 EDO.6: 3 residues within 4Å: Chain A: D.5, F.8 Ligands: EDO.9 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.5 EDO.7: 3 residues within 4Å: Chain A: F.21, V.22, K.26 No protein-ligand interaction detected (PLIP) EDO.8: 3 residues within 4Å: Chain A: P.68, R.71, A.72 No protein-ligand interaction detected (PLIP) EDO.9: 4 residues within 4Å: Chain A: D.5, F.8, Q.11 Ligands: EDO.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.5, A:Q.11, A:Q.11 EDO.10: 3 residues within 4Å: Chain A: E.42, R.44, T.45 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.42 EDO.11: 4 residues within 4Å: Chain A: N.15, L.16, I.17, V.19 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.17, A:I.17 EDO.12: 3 residues within 4Å: Chain A: R.32, N.33, L.36 No protein-ligand interaction detected (PLIP) EDO.13: 2 residues within 4Å: Chain A: M.3, T.4 No protein-ligand interaction detected (PLIP) EDO.14: 7 residues within 4Å: Chain A: S.6, E.7, W.38, R.44, L.52 Ligands: PEG.2, EDO.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:W.38 EDO.15: 4 residues within 4Å: Chain A: L.55, E.76 Ligands: PEG.2, EDO.14 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.76

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rimsa, V. et al., Structure of the Scan Domain of Human Paternally Expressed Gene 3 Protein. Plos One (2013)

Release Date

2013-04-17

Peptides

PATERNALLY-EXPRESSED GENE 3 PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PATERNALLY-EXPRESSED GENE 3 PROTEIN

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