SMTL ID : 4bio.1

FACTOR INHIBITING HIF-1 ALPHA IN COMPLEX WITH 8-HYDROXYQUINOLINE-5- CARBOXYLIC ACID

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.45 Å

Oligo State

homo-dimer

Ligands

2 x FE: FE (III) ION(Non-covalent)

FE.1: 4 residues within 4Å: Chain A: H.202, D.204, H.282 Ligands: 8XQ.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.202, A:D.204, A:D.204, H2O.3 FE.12: 4 residues within 4Å: Chain B: H.202, D.204, H.282 Ligands: 8XQ.13 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.202, B:D.204, B:D.204, H2O.8

2 x 8XQ: 8-hydroxyquinoline-5-carboxylic acid(Non-covalent)

8XQ.2: 14 residues within 4Å: Chain A: Y.105, Y.148, Q.150, L.191, T.199, H.202, D.204, F.210, K.217, H.282, I.284, N.297, W.299 Ligands: FE.1 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:Y.105, A:L.191, A:T.199, A:F.210, A:I.284 Hydrogen bonds: A:Y.148, A:T.199 Water bridges: A:N.208 Salt bridges: A:K.217 8XQ.13: 14 residues within 4Å: Chain B: Y.105, Y.148, Q.150, L.191, T.199, H.202, D.204, F.210, K.217, H.282, I.284, N.297, W.299 Ligands: FE.12 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:Y.105, B:L.191, B:T.199, B:F.210, B:I.284 Water bridges: B:N.208 Salt bridges: B:K.217

10 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: R.141, G.143, E.144, E.145 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.144, A:E.145 Salt bridges: A:R.141 SO4.4: 4 residues within 4Å: Chain A: K.110, D.240, R.323, K.327 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:D.240 Water bridges: A:E.205, A:R.323, A:R.323, A:R.323 Salt bridges: A:K.110, A:R.323, A:K.327 SO4.5: 5 residues within 4Å: Chain A: R.146, E.195, G.196, L.288, N.289 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.289, A:N.289 Water bridges: A:R.36 Salt bridges: A:R.146 SO4.6: 3 residues within 4Å: Chain A: L.313, K.314, A.315 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.313, A:A.315 Salt bridges: A:K.314 SO4.7: 4 residues within 4Å: Chain A: D.225, E.228, A.315, K.318 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.318 SO4.14: 4 residues within 4Å: Chain B: R.141, G.143, E.144, E.145 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.144, B:E.145 Salt bridges: B:R.141 SO4.15: 4 residues within 4Å: Chain B: K.110, D.240, R.323, K.327 7 PLIP interactions: 7 interactions with chain B Water bridges: B:E.205, B:R.323, B:R.323, B:R.323 Salt bridges: B:K.110, B:R.323, B:K.327 SO4.16: 5 residues within 4Å: Chain B: R.146, E.195, G.196, L.288, N.289 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.289, B:N.289 Water bridges: B:R.36 Salt bridges: B:R.146 SO4.17: 3 residues within 4Å: Chain B: L.313, K.314, A.315 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.313, B:A.315 Salt bridges: B:K.314 SO4.18: 4 residues within 4Å: Chain B: D.225, E.228, A.315, K.318 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:K.318

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 4 residues within 4Å: Chain A: L.153, N.154, D.155, F.165 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.154 GOL.9: 3 residues within 4Å: Chain A: D.204, Q.206, W.299 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.187, A:E.205, A:Q.206, A:Q.206 Water bridges: A:D.204 GOL.10: 6 residues within 4Å: Chain A: K.102, Y.233, S.243, Q.244, V.245, D.246 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.102, A:Y.233, A:S.243, A:Q.244 GOL.11: 3 residues within 4Å: Chain A: Q.151, T.152, N.154 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.151, A:N.154 Water bridges: A:T.152 GOL.19: 4 residues within 4Å: Chain B: L.153, N.154, D.155, F.165 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.154 GOL.20: 3 residues within 4Å: Chain B: D.204, Q.206, W.299 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:S.187, B:E.205, B:Q.206, B:Q.206 Water bridges: B:D.204 GOL.21: 6 residues within 4Å: Chain B: K.102, Y.233, S.243, Q.244, V.245, D.246 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.102, B:S.243, B:Q.244 GOL.22: 3 residues within 4Å: Chain B: Q.151, T.152, N.154 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.151, B:N.154 Water bridges: B:T.152, B:T.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hopkinson, R.J. et al., 5-Carboxy-8-hydroxyquinoline is a Broad Spectrum 2-Oxoglutarate Oxygenase Inhibitor which Causes Iron Translocation. Chem Sci (2013)

Release Date

2013-04-24

Peptides

HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

HYPOXIA-INDUCIBLE FACTOR 1-ALPHA INHIBITOR

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