SMTL ID : 4bk7.1

Crystal Structure of a variant of the Major Birch Pollen Allergen Bet v 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.14 Å

Oligo State

monomer

Ligands

5 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: E.6, T.7, E.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.7, A:T.7, A:E.8 SO4.2: 4 residues within 4Å: Chain A: G.1, V.2, H.121, T.122 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.1, A:T.122 Salt bridges: A:H.121 SO4.3: 3 residues within 4Å: Chain A: R.70, E.96, K.97 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.84 Salt bridges: A:R.70, A:K.97 SO4.4: 4 residues within 4Å: Chain A: R.145, E.148, S.149, L.152 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.148 SO4.5: 3 residues within 4Å: Chain A: S.39, P.59, E.60 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.60 Water bridges: A:E.60

3 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.6: 7 residues within 4Å: Chain A: G.26, D.27, F.30, K.54, D.69, Y.81, Y.83 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.30, A:D.69, A:Y.81, A:Y.83 Hydrogen bonds: A:D.27, A:Y.81 Water bridges: A:G.26, A:G.26, A:D.27 MPD.7: 7 residues within 4Å: Chain A: F.58, F.64, P.90, I.98, A.135, S.136, M.139 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.58, A:I.98, A:M.139 Water bridges: A:S.136 MPD.8: 4 residues within 4Å: Chain A: Q.36, F.62, M.139, T.142 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.62 Hydrogen bonds: A:T.142

1 x NA: SODIUM ION(Non-functional Binders)

NA.9: 3 residues within 4Å: Chain A: T.107, D.109, G.111 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.109, A:G.111 Water bridges: A:D.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kofler, S.G. et al., Stabilization of the Dimeric Birch Pollen Allergen Bet V 1 Impacts its Immunological Properties. J.Biol.Chem. (2014)

Release Date

2013-11-27

Peptides

MAJOR POLLEN ALLERGEN BET V 1-A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MAJOR POLLEN ALLERGEN BET V 1-A