SMTL ID : 4bkr.1

Enoyl-ACP reductase from Yersinia pestis (wildtype, removed Histag) with cofactor NADH

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 34 residues within 4Å: Chain A: G.55, A.56, S.57, T.58, G.59, Y.60, F.80, F.81, E.82, G.117, D.118, A.119, F.120, S.145, L.146, A.147, S.148, M.203, F.230, T.231, Y.232, Y.242, K.251, L.278, K.279, A.280, V.281, T.283, Q.284, A.285, S.286 Ligands: GOL.3, DMS.4, NA.5 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:Y.60, A:Y.232, A:Y.232, A:L.278 Hydrogen bonds: A:G.55, A:S.57, A:S.57, A:T.58, A:T.58, A:T.58, A:Y.60, A:F.81, A:E.82, A:D.118, A:A.119, A:L.146, A:A.147, A:K.251, A:V.281, A:T.283, A:A.285, A:S.286 Water bridges: A:L.146, A:S.148, A:S.148, A:Y.242, A:Q.284, A:Q.284

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: D.118, F.120, R.150, R.151, T.152 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.118, A:T.152, A:T.152 Water bridges: A:D.118 GOL.3: 5 residues within 4Å: Chain A: F.81, A.147, S.148, P.149 Ligands: NAI.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.148 Water bridges: A:F.81, A:A.147

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 7 residues within 4Å: Chain A: Y.232, Y.242, A.280, S.286, I.289, M.292 Ligands: NAI.1 1 PLIP interactions: 1 interactions with chain A pi-Cation interactions: A:Y.232

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 6 residues within 4Å: Chain A: G.55, T.58, Y.60, G.61, S.145 Ligands: NAI.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.55, A:Y.60, A:G.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Neckles, C. et al., Selectivity of Pyridone- and Diphenyl Ether-Based Inhibitors for the Yersinia Pestis Fabv Enoyl-Acp Reductase. Biochemistry (2016)

Release Date

2014-05-14

Peptides

PUTATIVE REDUCTASE YPZ3_3519: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PUTATIVE REDUCTASE YPZ3_3519