SMTL ID : 4bku.1

Enoyl-ACP reductase FabI from Burkholderia pseudomallei with cofactor NADH and inhibitor PT155

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-tetramer

Ligands

4 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 21 residues within 4Å: Chain A: G.13, L.15, S.19, I.20, V.40, C.63, D.64, V.65, S.91, I.92, G.93, I.119, L.144, S.145, Y.146, K.163, A.189, G.190, P.191, I.192 Ligands: 1S5.2 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.20, A:Y.146, A:A.189 Hydrogen bonds: A:G.13, A:I.20, A:D.64, A:V.65, A:I.92, A:G.93, A:K.163, A:I.192 Water bridges: A:S.16, A:A.21, A:V.40, A:V.40, A:I.92 NAI.3: 21 residues within 4Å: Chain B: G.13, L.15, S.19, I.20, V.40, C.63, D.64, V.65, S.91, I.92, G.93, I.119, L.144, S.145, Y.146, K.163, A.189, G.190, P.191, I.192 Ligands: 1S5.4 17 PLIP interactions: 17 interactions with chain B Hydrophobic interactions: B:I.20, B:Y.146, B:A.189 Hydrogen bonds: B:G.13, B:I.20, B:D.64, B:V.65, B:I.92, B:G.93, B:K.163, B:I.192 Water bridges: B:G.13, B:S.16, B:A.21, B:V.40, B:V.40, B:I.92 NAI.5: 21 residues within 4Å: Chain C: G.13, L.15, S.19, I.20, V.40, C.63, D.64, V.65, S.91, I.92, G.93, I.119, L.144, S.145, Y.146, K.163, A.189, G.190, P.191, I.192 Ligands: 1S5.6 18 PLIP interactions: 18 interactions with chain C Hydrophobic interactions: C:I.20, C:Y.146, C:A.189 Hydrogen bonds: C:G.13, C:I.20, C:D.64, C:D.64, C:V.65, C:I.92, C:G.93, C:K.163, C:I.192 Water bridges: C:G.13, C:S.16, C:A.21, C:V.40, C:V.40, C:I.92 NAI.7: 21 residues within 4Å: Chain D: G.13, L.15, S.19, I.20, V.40, C.63, D.64, V.65, S.91, I.92, G.93, I.119, L.144, S.145, Y.146, K.163, A.189, G.190, P.191, I.192 Ligands: 1S5.8 18 PLIP interactions: 18 interactions with chain D Hydrophobic interactions: D:I.20, D:Y.146, D:A.189 Hydrogen bonds: D:G.13, D:I.20, D:D.64, D:D.64, D:V.65, D:I.92, D:G.93, D:K.163, D:I.192 Water bridges: D:G.13, D:S.16, D:A.21, D:V.40, D:V.40, D:I.92

4 x 1S5: 5-(4-amino-2-methylphenoxy)-2-hexyl-4-hydroxy-1-methylpyridinium(Non-covalent)

1S5.2: 14 residues within 4Å: Chain A: G.93, F.94, A.95, I.100, Y.146, P.154, N.155, Y.156, M.159, K.163, I.200, F.203, I.206 Ligands: NAI.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:I.100, A:Y.146, A:Y.146, A:Y.146, A:N.155, A:Y.156, A:Y.156, A:Y.156, A:I.206 Hydrogen bonds: A:A.95, A:A.95 1S5.4: 14 residues within 4Å: Chain B: G.93, F.94, A.95, I.100, Y.146, P.154, N.155, Y.156, M.159, K.163, I.200, F.203, I.206 Ligands: NAI.3 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:I.100, B:Y.146, B:Y.146, B:Y.146, B:N.155, B:Y.156, B:Y.156, B:Y.156, B:I.206 Hydrogen bonds: B:A.95, B:A.95 1S5.6: 14 residues within 4Å: Chain C: G.93, F.94, A.95, I.100, Y.146, P.154, N.155, Y.156, M.159, K.163, I.200, F.203, I.206 Ligands: NAI.5 12 PLIP interactions: 12 interactions with chain C Hydrophobic interactions: C:I.100, C:Y.146, C:Y.146, C:Y.146, C:N.155, C:Y.156, C:Y.156, C:Y.156, C:I.206 Hydrogen bonds: C:A.95, C:A.95, C:Y.156 1S5.8: 14 residues within 4Å: Chain D: G.93, F.94, A.95, I.100, Y.146, P.154, N.155, Y.156, M.159, K.163, I.200, F.203, I.206 Ligands: NAI.7 12 PLIP interactions: 12 interactions with chain D Hydrophobic interactions: D:I.100, D:Y.146, D:Y.146, D:Y.146, D:N.155, D:Y.156, D:Y.156, D:Y.156, D:I.206 Hydrogen bonds: D:A.95, D:A.95, D:Y.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schiebel, J. et al., Rational Design of Broad Spectrum Antibacterial Activity Based on a Clinically Relevant Enoyl-Acyl Carrier Protein (Acp) Reductase Inhibitor. J.Biol.Chem. (2014)

Release Date

2014-04-09

Peptides

ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [NADH]

Related Entries With Identical Sequence