SMTL ID : 4blp.1

P4 PROTEIN FROM BACTERIOPHAGE PHI13

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-hexamer

Ligands

2 x FLC: CITRATE ANION(Non-covalent)

FLC.1: 9 residues within 4Å: Chain A: G.154, T.155, A.157, G.158, K.159, S.160 Chain B: A.275, R.294, R.299 12 PLIP interactions: 3 interactions with chain B, 9 interactions with chain A Hydrogen bonds: B:R.299, A:G.154, A:A.157, A:G.158, A:K.159, A:S.160, A:S.160 Salt bridges: B:R.294, B:R.299, A:K.159 Water bridges: A:S.160, A:K.161 FLC.6: 9 residues within 4Å: Chain A: A.275, R.294, R.299 Chain F: G.154, T.155, A.157, G.158, K.159, S.160 17 PLIP interactions: 13 interactions with chain F, 4 interactions with chain A Hydrogen bonds: F:A.157, F:G.158, F:K.159, F:S.160, F:S.160, F:S.160, F:S.160 Water bridges: F:S.160, F:S.160, F:K.161, F:E.176, F:D.213, A:R.294, A:R.294 Salt bridges: F:K.159, A:R.294, A:R.299

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 7 residues within 4Å: Chain B: H.137, A.204, D.207, Y.208, R.209, V.251, L.252 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.207, B:R.209, B:R.209, B:L.252, B:L.252 Water bridges: B:N.138 GOL.3: 7 residues within 4Å: Chain C: H.137, A.204, D.207, Y.208, R.209, V.251, L.252 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:D.207, C:R.209, C:R.209, C:L.252, C:L.252 Water bridges: C:N.138 GOL.4: 7 residues within 4Å: Chain D: H.137, A.204, D.207, Y.208, R.209, V.251, L.252 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:D.207, D:R.209, D:R.209, D:L.252, D:L.252 Water bridges: D:H.137, D:N.138 GOL.5: 7 residues within 4Å: Chain E: H.137, A.204, D.207, Y.208, R.209, V.251, L.252 7 PLIP interactions: 7 interactions with chain E Hydrogen bonds: E:H.137, E:D.207, E:R.209, E:R.209, E:L.252, E:L.252 Water bridges: E:N.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

El Omari, K. et al., Tracking in Atomic Detail the Functional Specializations in Viral Reca Helicases that Occur During Evolution. Nucleic Acids Res. (2013)

Release Date

2013-08-21

Peptides

PACKAGING ENZYME P4: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

PACKAGING ENZYME P4