SMTL ID : 4blt.1

P4 PROTEIN FROM BACTERIOPHAGE PHI12 S292A MUTANT IN COMPLEX WITH AMPcPP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-hexamer

Ligands

6 x APC: DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER(Non-covalent)

APC.1: 15 residues within 4Å: Chain A: G.135, K.136, T.137, E.160, K.192, N.234, Y.288, A.292 Chain F: S.252, R.272, G.276, L.277, Q.278, R.279, N.318 12 PLIP interactions: 5 interactions with chain F, 7 interactions with chain A Hydrogen bonds: F:G.276, F:Q.278, F:R.279, F:N.318, A:K.136, A:T.137, A:T.137, A:N.234, A:Y.288 Salt bridges: F:R.272, A:K.192 pi-Stacking: A:Y.288 APC.2: 16 residues within 4Å: Chain A: S.252, R.272, E.275, G.276, L.277, Q.278, R.279, N.318 Chain B: G.135, K.136, T.137, E.160, K.192, N.234, Y.288, A.292 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:R.251, A:R.272, A:Q.278, A:R.279, B:K.136, B:T.137, B:N.234 Salt bridges: A:R.272, B:K.192 pi-Stacking: B:Y.288 APC.3: 15 residues within 4Å: Chain B: S.252, R.272, G.276, L.277, Q.278, R.279 Chain C: G.135, K.136, T.137, P.138, E.160, K.192, N.234, Y.288, A.292 10 PLIP interactions: 3 interactions with chain B, 7 interactions with chain C Hydrogen bonds: B:Q.278, B:R.279, C:K.136, C:T.137, C:T.137, C:E.160, C:N.234 Salt bridges: B:R.272, C:K.192 pi-Stacking: C:Y.288 APC.4: 15 residues within 4Å: Chain C: S.252, R.272, G.276, L.277, Q.278, R.279, N.318 Chain D: G.135, K.136, T.137, E.160, K.192, N.234, Y.288, A.292 10 PLIP interactions: 5 interactions with chain D, 5 interactions with chain C Hydrogen bonds: D:K.136, D:T.137, D:N.234, C:G.276, C:Q.278, C:R.279, C:N.318 Salt bridges: D:K.192, C:R.272 pi-Stacking: D:Y.288 APC.5: 16 residues within 4Å: Chain D: S.252, R.272, E.275, G.276, L.277, Q.278, R.279, N.318 Chain E: G.135, K.136, T.137, E.160, K.192, N.234, Y.288, A.292 11 PLIP interactions: 6 interactions with chain E, 5 interactions with chain D Hydrogen bonds: E:K.136, E:T.137, E:N.234, E:Y.288, D:R.251, D:R.272, D:Q.278, D:R.279 Salt bridges: E:K.192, D:R.272 pi-Stacking: E:Y.288 APC.6: 15 residues within 4Å: Chain E: S.252, R.272, G.276, L.277, Q.278, R.279 Chain F: G.135, K.136, T.137, P.138, E.160, K.192, N.234, Y.288, A.292 11 PLIP interactions: 3 interactions with chain E, 8 interactions with chain F Hydrogen bonds: E:Q.278, E:R.279, F:K.136, F:T.137, F:T.137, F:E.160, F:N.234, F:Y.288 Salt bridges: E:R.272, F:K.192 pi-Stacking: F:Y.288

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

El Omari, K. et al., Tracking in Atomic Detail the Functional Specializations in Viral Reca Helicases that Occur During Evolution. Nucleic Acids Res. (2013)

Release Date

2013-08-21

Peptides

NTPASE P4: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

NTPASE P4