SMTL ID : 4bmp.1

Crystal Structure of Bacillus cereus Ribonucleotide Reductase di- iron NrdF in Complex with NrdI (2.1 A resolution)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

hetero-1-1-mer

Ligands

2 x FE2: FE (II) ION(Non-covalent)

FE2.1: 6 residues within 4Å: Chain A: D.62, E.93, H.96, F.165, E.195 Ligands: FE2.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.62, A:E.93, A:H.96, A:E.195, A:E.195 FE2.2: 5 residues within 4Å: Chain A: E.93, E.161, E.195, H.198 Ligands: FE2.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.93, A:E.93, A:E.161, A:E.195, A:H.198

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: V.200 Chain B: N.71, L.99 Ligands: FMN.4 Ligand excluded by PLIP

1 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.4: 24 residues within 4Å: Chain A: F.17, Q.20, V.200 Chain B: S.7, M.8, T.9, G.10, N.11, V.12, Y.41, T.42, T.43, G.44, F.45, G.46, S.69, G.70, N.71, W.74, M.77, F.78, G.79, L.99 Ligands: CL.3 25 PLIP interactions: 3 interactions with chain A, 22 interactions with chain B Hydrophobic interactions: A:F.17, A:Q.20, A:V.200, B:W.74, B:W.74 Hydrogen bonds: B:M.8, B:T.9, B:T.9, B:G.10, B:N.11, B:N.11, B:N.11, B:V.12, B:T.42, B:T.42, B:F.45, B:G.46, B:S.69, B:N.71, B:M.77, B:G.79, B:L.99 pi-Stacking: B:W.74, B:W.74, B:W.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hammerstad, M. et al., Crystal Structure of Bacillus Cereus Class Ib Ribonucleotide Reductase Di-Iron Nrdf in Complex with Nrdi. Acs Chem.Biol. (2014)

Release Date

2014-03-19

Peptides

RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA: A
NRDI: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

RIBONUCLEOSIDE-DIPHOSPHATE REDUCTASE SUBUNIT BETA

NRDI

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