SMTL ID : 4bop.1

Structure of OTUD1 OTU domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-octamer

Ligands

8 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: F.26, K.41, G.45, D.46, Q.47 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.46, A:Q.47, A:Q.47 Salt bridges: A:K.41 PO4.2: 5 residues within 4Å: Chain B: F.26, K.41, G.45, D.46, Q.47 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Q.47, B:Q.47 Salt bridges: B:K.41 PO4.3: 5 residues within 4Å: Chain C: F.26, K.41, G.45, D.46, Q.47 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.46, C:Q.47, C:Q.47 Salt bridges: C:K.41 PO4.4: 5 residues within 4Å: Chain D: F.26, K.41, G.45, D.46, Q.47 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:Q.47, D:Q.47 Salt bridges: D:K.41 PO4.5: 5 residues within 4Å: Chain E: F.26, K.41, G.45, D.46, Q.47 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:D.46, E:Q.47, E:Q.47 Salt bridges: E:K.41 PO4.6: 5 residues within 4Å: Chain F: F.26, K.41, G.45, D.46, Q.47 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:Q.47, F:Q.47 Salt bridges: F:K.41 PO4.7: 5 residues within 4Å: Chain G: F.26, K.41, G.45, D.46, Q.47 4 PLIP interactions: 4 interactions with chain G Hydrogen bonds: G:D.46, G:Q.47, G:Q.47 Salt bridges: G:K.41 PO4.8: 5 residues within 4Å: Chain H: F.26, K.41, G.45, D.46, Q.47 3 PLIP interactions: 3 interactions with chain H Hydrogen bonds: H:Q.47, H:Q.47 Salt bridges: H:K.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mevissen, T.E.T. et al., Otu Deubiquitinases Reveal Mechanisms of Linkage Specificity and Enable Ubiquitin Chain Restriction Analysis. Cell(Cambridge,Mass.) (2013)

Release Date

2013-07-17

Peptides

OTU DOMAIN-CONTAINING PROTEIN 1: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

G
A

H
B

OTU DOMAIN-CONTAINING PROTEIN 1