SMTL ID : 4boq.1

Structure of OTUD2 OTU domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

homo-dimer

Ligands

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: E.104, R.117, G.119, E.120, A.122, G.123, Y.124, S.157 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.117, A:A.122, A:G.123, A:Y.124 Water bridges: A:E.120, A:E.120 GOL.2: 5 residues within 4Å: Chain A: R.142, L.152, F.155, S.156, D.159 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.142, A:S.156 GOL.3: 3 residues within 4Å: Chain A: P.16, R.142, I.161 2 PLIP interactions: 2 interactions with chain A Water bridges: A:R.142, A:R.142 GOL.4: 8 residues within 4Å: Chain A: K.4, R.5 Chain B: Y.78, W.81, G.90, A.91, I.92, E.93 5 PLIP interactions: 3 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:I.92, B:E.93 Water bridges: B:A.91, A:K.4, A:K.4 GOL.5: 8 residues within 4Å: Chain B: E.104, R.117, G.119, E.120, A.122, G.123, Y.124, S.157 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:R.117, B:A.122, B:G.123, B:Y.124 Water bridges: B:R.117, B:E.120 GOL.6: 5 residues within 4Å: Chain B: R.142, L.152, F.155, S.156, D.159 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.142, B:S.156, B:D.159 GOL.7: 3 residues within 4Å: Chain B: P.16, R.142, I.161 2 PLIP interactions: 2 interactions with chain B Water bridges: B:R.142, B:R.142 GOL.8: 8 residues within 4Å: Chain A: Y.78, W.81, G.90, A.91, I.92, E.93 Chain B: K.4, R.5 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:I.92, A:E.93 Water bridges: A:A.91, B:K.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mevissen, T.E.T. et al., Otu Deubiquitinases Reveal Mechanisms of Linkage Specificity and Enable Ubiquitin Chain Restriction Analysis. Cell(Cambridge,Mass.) (2013)

Release Date

2013-07-17

Peptides

UBIQUITIN THIOESTERASE OTU1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

UBIQUITIN THIOESTERASE OTU1