SMTL ID : 4bqe.1

Arabidopsis thaliana Cytosolic Alpha-1,4-glucan Phosphorylase (PHS2)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x PLP: PYRIDOXAL-5'-PHOSPHATE(Covalent)

PLP.1: 14 residues within 4Å: Chain A: L.126, G.171, R.174, W.527, K.605, Y.688, N.689, V.690, A.693, G.715, T.716, S.717, N.718, K.720 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.126, A:R.174, A:Y.688, A:K.720 Hydrogen bonds: A:Y.688, A:T.716, A:S.717, A:S.717, A:S.717 Water bridges: A:G.171, A:K.605, A:K.605, A:G.715, A:G.715 Salt bridges: A:K.605, A:K.611 PLP.6: 16 residues within 4Å: Chain B: L.126, G.170, G.171, R.174, W.527, K.605, Y.688, N.689, V.690, A.693, G.715, T.716, S.717, N.718, K.720 Ligands: GOL.8 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:L.126, B:R.174, B:Y.688, B:V.690, B:K.720 Hydrogen bonds: B:T.716, B:T.716, B:S.717, B:S.717, B:S.717, B:K.720 Water bridges: B:G.171, B:K.605, B:K.605 Salt bridges: B:K.611

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: E.745, E.746, F.748, F.749, K.827, M.841 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:F.748 Water bridges: A:F.748, A:F.748, A:L.750, A:L.750 GOL.7: 6 residues within 4Å: Chain B: P.235, R.237, W.252, R.386, L.387, D.391 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:R.237, B:W.252, B:Q.343, B:R.386, B:R.386, B:D.391 Water bridges: B:R.237 GOL.8: 7 residues within 4Å: Chain B: G.171, H.412, V.491, N.520, G.715, T.716 Ligands: PLP.6 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:H.412, B:N.520, B:G.715, B:T.716, B:T.716 Water bridges: B:S.714

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 12 residues within 4Å: Chain A: P.524, R.525, I.549, T.550, D.551, L.552, D.553, G.850, K.851, S.853, D.855, R.856 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.525, A:L.552, A:G.850, A:S.853 Water bridges: A:D.553, A:D.553 PEG.4: 5 residues within 4Å: Chain A: V.592, N.664, G.667, D.668, N.671 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.664, A:N.671 PEG.9: 4 residues within 4Å: Chain B: M.389, W.396, R.433, E.436 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.433, B:R.433

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 3 residues within 4Å: Chain A: H.608, F.650, Y.653 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O'Neill, E.C. et al., Sugar-Coated Sensor Chip and Nanoparticle Surfaces for the in Vitro Enzymatic Synthesis of Starch-Like Materials. Chem.Sci. (2014)

Release Date

2014-02-19

Peptides

ALPHA-GLUCAN PHOSPHORYLASE 2,4-GLUCAN PHOSPHORYLASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ALPHA-GLUCAN PHOSPHORYLASE 2,4-GLUCAN PHOSPHORYLASE

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