SMTL ID : 4bqm.1

Crystal structure of human liver-type glutaminase, catalytic domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.18 Å

Oligo State

homo-tetramer

Ligands

10 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: F.204, P.205, K.206 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.206 EDO.2: 8 residues within 4Å: Chain A: P.116, S.117, N.134, V.137, S.265, C.266, Y.269, S.272 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.117, A:N.134, A:S.272 EDO.3: 4 residues within 4Å: Chain A: T.105, D.106, H.109, K.110 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.109, A:H.109, A:K.110 EDO.5: 6 residues within 4Å: Chain A: S.265 Chain B: P.116, H.264, S.265, G.273, A.276 2 PLIP interactions: 2 interactions with chain B Water bridges: B:S.265, B:S.272 EDO.6: 6 residues within 4Å: Chain B: P.116, S.117, N.134, V.137, C.266, Y.269 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.117, B:N.134, B:Y.269 EDO.8: 3 residues within 4Å: Chain C: F.204, P.205, K.206 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.206 EDO.9: 8 residues within 4Å: Chain C: P.116, S.117, N.134, V.137, S.265, C.266, Y.269, S.272 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:S.117, C:N.134, C:S.272 EDO.10: 4 residues within 4Å: Chain C: T.105, D.106, H.109, K.110 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:H.109, C:H.109, C:K.110 EDO.12: 6 residues within 4Å: Chain C: S.265 Chain D: P.116, H.264, S.265, G.273, A.276 2 PLIP interactions: 2 interactions with chain D Water bridges: D:S.265, D:S.272 EDO.13: 6 residues within 4Å: Chain D: P.116, S.117, N.134, V.137, C.266, Y.269 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:S.117, D:N.134, D:Y.269

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: Y.192, M.211, D.215 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain B: Y.192, D.215 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain C: Y.192, M.211, D.215 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain D: Y.192, D.215 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferreira, I.M. et al., Crystal Structure of Human Liver-Type Glutaminase, Catalytic Domain. To be Published

Release Date

2013-07-10

Peptides

GLUTAMINASE LIVER ISOFORM, MITOCHONDRIAL: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

GLUTAMINASE LIVER ISOFORM, MITOCHONDRIAL