SMTL ID : 4br9.1

Legionella pneumophila NTPDase1 crystal form II, closed, apo

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 8 residues within 4Å: Chain A: G.18, S.19, T.85, A.86, G.155, G.156, A.157, S.158 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:S.19, A:S.19, A:T.85, A:T.85, A:A.86, A:G.87, A:G.156, A:A.157, A:S.158 Water bridges: A:T.20, A:T.20, A:G.155 SO4.3: 5 residues within 4Å: Chain A: S.192, F.193, L.194, H.243 Chain B: N.207 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:L.194, B:N.207 Water bridges: A:Q.248, B:N.207 Salt bridges: A:H.243 SO4.4: 8 residues within 4Å: Chain A: Q.204, F.205, L.206, N.207 Chain B: F.193, L.194, G.195, H.243 8 PLIP interactions: 4 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:Q.204, A:N.207, A:N.207, B:L.194, B:G.195 Water bridges: A:L.206, B:H.243 Salt bridges: B:H.243 SO4.5: 8 residues within 4Å: Chain B: S.19, T.85, A.86, E.126, G.155, G.156, A.157, S.158 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:S.19, B:T.85, B:T.85, B:A.86, B:G.87, B:G.156, B:A.157, B:S.158, B:S.158 Water bridges: B:E.126

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: L.275, Q.295, Q.299, L.304, Q.307, Y.308 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.295, A:Q.307 Water bridges: A:Q.299, A:Q.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zebisch, M. et al., Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases. Structure (2013)

Release Date

2013-07-17

Peptides

ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I

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