- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MOO: MOLYBDATE ION(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 2 residues within 4Å:- Chain A: E.126
- Ligands: MOO.1
No protein-ligand interaction detected (PLIP)MG.5: 2 residues within 4Å:- Chain A: C.6
- Ligands: GOL.6
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:C.6, H2O.1, H2O.1, H2O.1
MG.10: 3 residues within 4Å:- Chain A: S.237
- Chain B: S.241, K.244
5 PLIP interactions:1 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: B:S.241, A:S.237, H2O.9, H2O.9, H2O.12
MG.13: 2 residues within 4Å:- Chain B: E.126
- Ligands: MOO.12
No protein-ligand interaction detected (PLIP)MG.17: 3 residues within 4Å:- Chain A: S.241, K.244
- Chain B: S.237
5 PLIP interactions:1 interactions with chain A, 4 Ligand-Water interactions- Metal complexes: A:S.241, H2O.9, H2O.9, H2O.9, H2O.19
MG.18: 1 residues within 4Å:- Chain B: E.200
No protein-ligand interaction detected (PLIP)- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
MES.3: 9 residues within 4Å:- Chain A: H.191, S.192, F.193, V.242, H.243, K.244, Q.248
- Chain B: N.207, E.234
7 PLIP interactions:2 interactions with chain B, 5 interactions with chain A- Water bridges: B:S.208
- Salt bridges: B:E.234, A:H.243
- Hydrogen bonds: A:H.191, A:S.192, A:H.243, A:Q.248
MES.14: 10 residues within 4Å:- Chain A: N.207, S.208, E.234
- Chain B: H.191, S.192, F.193, V.242, H.243, K.244, Q.248
10 PLIP interactions:8 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:H.243, B:H.243, B:Q.248
- Water bridges: B:L.194, B:L.194, B:H.243, A:S.208
- Salt bridges: B:H.191, B:H.243, A:E.234
- 1 x NA: SODIUM ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.6: 3 residues within 4Å:- Chain A: N.77, Q.114
- Ligands: MG.5
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:N.77, A:Q.114
- Water bridges: A:C.6, A:C.6, A:N.77, A:N.77
GOL.16: 7 residues within 4Å:- Chain B: D.16, G.18, T.20, G.21, R.23, K.47
- Ligands: AMP.15
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:D.16, B:G.18, B:T.20
- Water bridges: B:T.20
- 1 x M27: BIS(MU2-OXO)-OCTAOXO-DIMOLYBDENUM (VI)(Non-covalent)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
AMP.15: 13 residues within 4Å:- Chain B: T.20, R.23, K.47, K.49, G.156, Q.198, G.266, N.269, L.270, Y.313, Y.317, L.320
- Ligands: GOL.16
12 PLIP interactions:12 interactions with chain B- Hydrogen bonds: B:T.20, B:R.23, B:Q.198, B:N.269, B:Y.317
- Water bridges: B:T.20, B:G.156, B:G.266
- Salt bridges: B:K.47, B:K.49
- pi-Stacking: B:Y.313, B:Y.313
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zebisch, M. et al., Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases. Structure (2013)
- Release Date
- 2013-07-17
- Peptides
- ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x MOO: MOLYBDATE ION(Non-covalent)
- 6 x MG: MAGNESIUM ION(Non-covalent)
- 2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)
- 1 x NA: SODIUM ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 1 x M27: BIS(MU2-OXO)-OCTAOXO-DIMOLYBDENUM (VI)(Non-covalent)
- 1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- 1 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Zebisch, M. et al., Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases. Structure (2013)
- Release Date
- 2013-07-17
- Peptides
- ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B