SMTL ID : 4brm.1

Sulfur SAD phasing of the Legionella pneumophila NTPDase1 - crystal form III (closed) in complex with sulfate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: G.18, S.19, E.126, G.155, G.156, A.157 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.19, A:S.19, A:G.156, A:A.157, A:S.158 Water bridges: A:T.20, A:T.85, A:A.86, A:A.86, A:E.126, A:D.153 SO4.2: 7 residues within 4Å: Chain A: F.193, L.194, G.195, H.243 Chain B: Q.204, L.206, N.207 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:N.207, B:N.207, A:L.194, A:G.195 Water bridges: B:L.206 Salt bridges: A:H.243 SO4.5: 9 residues within 4Å: Chain B: G.18, S.19, T.85, A.86, G.87, G.155, G.156, A.157, S.158 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:S.19, B:S.19, B:T.85, B:A.86, B:G.87, B:G.156, B:A.157, B:S.158 Water bridges: B:T.20, B:D.153, B:G.155 SO4.6: 5 residues within 4Å: Chain A: N.207 Chain B: H.191, F.193, L.194, H.243 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:S.192, B:L.194, A:N.207 Salt bridges: B:H.243

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: N.207, P.219, D.220 Chain B: R.89 Ligand excluded by PLIP CL.4: 5 residues within 4Å: Chain A: R.89, L.194 Chain B: N.207, P.219, D.220 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zebisch, M. et al., Crystallographic Snapshots Along the Reaction Pathway of Nucleoside Triphosphate Diphosphohydrolases. Structure (2013)

Release Date

2013-07-17

Peptides

ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I

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