SMTL ID : 4bsk.1

Crystal structure of VEGF-C in complex with VEGFR-3 domains D1-2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.20 Å

Oligo State

hetero-2-2-mer

Ligands

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain B: P.33, Y.60, S.79, N.105, H.106 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain D: P.33, Y.60, S.79, N.105, H.106 No protein-ligand interaction detected (PLIP)

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: N.11, I.12, S.26 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.11 NAG.3: 1 residues within 4Å: Chain A: N.82 No protein-ligand interaction detected (PLIP) NAG.4: 1 residues within 4Å: Chain A: N.144 No protein-ligand interaction detected (PLIP) NAG.5: 4 residues within 4Å: Chain B: N.75, T.76, T.78, H.106 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.78, B:T.78, B:Y.80, B:Y.80 NAG.7: 3 residues within 4Å: Chain C: N.11, I.12, S.26 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.11 NAG.8: 1 residues within 4Å: Chain C: N.82 No protein-ligand interaction detected (PLIP) NAG.9: 1 residues within 4Å: Chain C: N.144 No protein-ligand interaction detected (PLIP) NAG.10: 4 residues within 4Å: Chain D: N.75, T.76, T.78, H.106 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:T.78, D:T.78, D:Y.80, D:Y.80

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Leppanen, V.-M. et al., Structural and Mechanistic Insights Into Vegfr-3 Ligand Binding and Activation. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-07-31

Peptides

VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 3: AC
VASCULAR ENDOTHELIAL GROWTH FACTOR C: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
C

D
C

VASCULAR ENDOTHELIAL GROWTH FACTOR RECEPTOR 3

VASCULAR ENDOTHELIAL GROWTH FACTOR C