SMTL ID : 4bv4.1

Structure and allostery in Toll-Spatzle recognition

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-2-1-mer

Ligands

1 x NAG- NAG- BMA- MAN- MAN- BMA- MAN- BMA: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-BMA-MAN-BMA.1: 8 residues within 4Å: Chain A: Q.53 Chain C: I.296, R.298, N.319, S.343, T.366, D.367, Q.390 1 PLIP interactions: 1 interactions with chain C Water bridges: C:T.366

4 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain C: N.53, R.79 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.53 NAG.3: 5 residues within 4Å: Chain C: L.110, M.112, N.113, L.135, H.137 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:L.110 Hydrogen bonds: C:L.135, C:L.135 NAG.4: 5 residues within 4Å: Chain C: T.218, S.219, T.242, N.243, H.267 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.242, C:N.243 NAG.5: 5 residues within 4Å: Chain C: V.339, N.340, T.363, N.364, S.388 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:N.340, C:T.363, C:T.363

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lewis, M. et al., Cytokine Spatzle Binds to the Drosophila Immunoreceptor Toll with a Neurotrophin-Like Specificity and Couples Receptor Activation. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-12-04

Peptides

PROTEIN SPAETZLE C-106: AB
PROTEIN TOLL, VARIABLE LYMPHOCYTE RECEPTOR B CHIMERA: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
L

B
M

C
R

PROTEIN SPAETZLE C-106

PROTEIN TOLL, VARIABLE LYMPHOCYTE RECEPTOR B CHIMERA