SMTL ID : 4bva.1

Crystal structure of the NADPH-T3 form of mouse Mu-crystallin.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

2 x NDP: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NDP.1: 25 residues within 4Å: Chain A: H.113, T.137, R.140, T.141, G.164, A.165, G.166, V.167, Q.168, N.189, R.190, T.191, N.194, V.225, T.226, M.227, A.228, V.247, G.248, A.249, S.250, S.313, L.314, G.315 Ligands: T3.2 32 PLIP interactions: 32 interactions with chain A Hydrophobic interactions: A:T.137, A:T.141 Hydrogen bonds: A:R.140, A:A.165, A:G.166, A:V.167, A:Q.168, A:N.189, A:N.189, A:R.190, A:T.191, A:T.191, A:N.194, A:T.226, A:M.227, A:V.247, A:A.249, A:S.250 Water bridges: A:R.69, A:A.169, A:R.190, A:R.190, A:R.190, A:R.190, A:T.229, A:T.229, A:S.250, A:S.250 Salt bridges: A:H.113, A:H.113, A:R.190 pi-Cation interactions: A:R.190 NDP.4: 25 residues within 4Å: Chain B: H.113, T.137, R.140, T.141, G.164, A.165, G.166, V.167, Q.168, N.189, R.190, T.191, N.194, V.225, T.226, M.227, A.228, V.247, G.248, A.249, S.250, S.313, L.314, G.315 Ligands: T3.5 30 PLIP interactions: 30 interactions with chain B Hydrophobic interactions: B:T.137, B:T.141 Hydrogen bonds: B:R.140, B:A.165, B:G.166, B:V.167, B:Q.168, B:N.189, B:N.189, B:R.190, B:T.191, B:T.191, B:N.194, B:T.226, B:M.227, B:V.247, B:A.249, B:S.250 Water bridges: B:R.140, B:A.169, B:R.190, B:T.229, B:T.229, B:S.250, B:S.250, B:S.250 Salt bridges: B:H.113, B:H.113, B:R.190 pi-Cation interactions: B:R.190

2 x T3: 3,5,3'TRIIODOTHYRONINE(Non-covalent)

T3.2: 13 residues within 4Å: Chain A: R.69, F.80, G.82, V.99, F.101, H.113, S.250, R.251, P.252, W.254, E.278, L.314 Ligands: NDP.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:V.99, A:F.101, A:R.251 Hydrogen bonds: A:S.250, A:S.250, A:L.314 Water bridges: A:R.69, A:R.69, A:R.69, A:R.69, A:R.69, A:R.140 Salt bridges: A:R.69, A:K.97 pi-Stacking: A:F.80 T3.5: 14 residues within 4Å: Chain B: R.69, V.71, F.80, G.82, V.99, F.101, H.113, S.250, R.251, P.252, W.254, E.278, L.314 Ligands: NDP.4 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:V.71, B:F.80, B:F.80, B:F.101, B:R.251 Hydrogen bonds: B:S.250, B:S.250 Water bridges: B:R.69, B:R.69, B:R.69, B:R.140, B:R.140 Salt bridges: B:R.69, B:K.97

2 x K: POTASSIUM ION(Non-covalent)

K.3: 6 residues within 4Å: Chain A: L.152, G.241, A.242, C.305, K.307, T.309 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:L.152, A:G.241, A:C.305, A:K.307, A:T.309 K.6: 7 residues within 4Å: Chain B: L.152, G.241, A.242, H.243, C.305, K.307, T.309 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:L.152, B:G.241, B:C.305, B:K.307, B:T.309

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Borel, F. et al., Crystal Structure of Mouse Mu-Crystallin Complexed with Nadph and the T3 Thyroid Hormone. FEBS J. (2014)

Release Date

2014-02-05

Peptides

THIOMORPHOLINE-CARBOXYLATE DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

THIOMORPHOLINE-CARBOXYLATE DEHYDROGENASE

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