SMTL ID : 4bvb.1

CRYSTAL STRUCTURE OF HUMAN SIRT3 IN COMPLEX WITH THE INHIBITOR EX-527 AND ADP-RIBOSE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x OCZ: (1S)-6-chloro-2,3,4,9-tetrahydro-1H-carbazole-1- carboxamide(Non-covalent)

OCZ.1: 15 residues within 4Å: Chain A: I.39, P.40, F.42, L.49, F.65, L.84, Q.113, N.114, I.115, D.116, H.133, I.176, V.177, F.178 Ligands: AR6.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.39, A:F.42, A:L.49, A:F.65, A:L.84, A:I.115, A:I.115, A:I.115, A:H.133, A:I.176 Hydrogen bonds: A:Q.113, A:I.115, A:D.116, A:D.116 pi-Stacking: A:F.42

1 x AR6: [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN PHOSPHATE(Non-covalent)

AR6.2: 22 residues within 4Å: Chain A: G.30, A.31, G.32, T.35, D.41, F.42, R.43, S.44, Q.113, H.133, F.179, G.204, T.205, S.206, V.209, N.229, R.230, D.231, G.249, D.250, V.251 Ligands: OCZ.1 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:A.31, A:T.35, A:F.42, A:R.43, A:R.43, A:Q.113, A:S.206, A:S.206, A:N.229, A:R.230, A:D.250, A:D.250, A:V.251 Water bridges: A:S.44, A:H.133, A:V.177, A:E.208, A:D.231, A:D.231 Salt bridges: A:R.43, A:R.43, A:H.133

1 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.141, C.144, C.165, C.168 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.141, A:C.144, A:C.165, A:C.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gertz, M. et al., Ex-527 Inhibits Sirtuins by Exploiting Their Unique Nad+-Dependent Deacetylation Mechanism. Proc.Natl.Acad.Sci.USA (2013)

Release Date

2013-07-17

Peptides

NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NAD-DEPENDENT PROTEIN DEACETYLASE SIRTUIN-3, MITOCHONDRIAL

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