SMTL ID : 4bvm.1

The peripheral membrane protein P2 from human myelin at atomic resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.93 Å

Oligo State

monomer

Ligands

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.1: 25 residues within 4Å: Chain A: F.18, Y.21, M.22, L.25, V.27, T.31, G.35, A.38, P.40, V.42, T.55, S.57, F.59, K.60, T.76, A.77, D.78, R.80, I.106, R.108, A.117, C.119, R.128, Y.130 Ligands: VCA.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:Y.21, A:L.25, A:P.40, A:F.59 Hydrogen bonds: A:Y.130 Water bridges: A:R.108, A:R.108, A:R.128, A:R.128 Salt bridges: A:R.108, A:R.128

1 x VCA: VACCENIC ACID(Non-covalent)

VCA.2: 27 residues within 4Å: Chain A: F.18, Y.21, M.22, L.25, V.27, T.31, G.35, A.38, P.40, V.42, T.55, S.57, F.59, K.60, N.61, T.62, T.76, A.77, D.78, R.80, I.106, R.108, A.117, C.119, R.128, Y.130 Ligands: PLM.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:P.40, A:T.55, A:F.59, A:F.59, A:K.60, A:A.77, A:D.78, A:I.106 Hydrogen bonds: A:Y.130 Water bridges: A:R.108, A:R.108, A:R.128, A:R.128 Salt bridges: A:R.108, A:R.128

2 x CIT: CITRIC ACID(Non-functional Binders)

CIT.3: 3 residues within 4Å: Chain A: G.28, L.29, A.30 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.29, A:A.30 CIT.4: 5 residues within 4Å: Chain A: K.11, A.38, K.39, S.57, T.58 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:K.39 Hydrogen bonds: A:K.39, A:T.58, A:T.58 Water bridges: A:K.11, A:K.11, A:K.11, A:K.11, A:L.37, A:F.59 Salt bridges: A:K.11, A:K.11, A:K.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruskamo, S. et al., Atomic Resolution View Into the Structure-Function Relationships of the Human Myelin Peripheral Membrane Protein P2. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-01-15

Peptides

MYELIN P2 PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

MYELIN P2 PROTEIN

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