SMTL ID : 4bvo.1

Legionella pneumophila NTPDase1 crystal form VI (part-open) in complex with polytungstate POM-1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.1: 9 residues within 4Å: Chain A: G.23, S.24, T.90, A.91, E.131, G.160, G.161, A.162, S.163 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:S.24, A:S.24, A:S.24, A:T.90, A:G.161, A:A.162, A:S.163 Water bridges: A:T.25, A:T.90, A:A.91, A:A.91, A:G.92, A:E.131 TLA.5: 9 residues within 4Å: Chain B: G.23, S.24, T.90, A.91, E.131, G.160, G.161, A.162, S.163 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:S.24, B:S.24, B:S.24, B:G.161, B:A.162, B:S.163 Water bridges: B:T.25, B:T.90, B:T.90, B:A.91, B:A.91, B:E.131, B:E.131

2 x E43: 12-POLYTUNGSTATE(Non-covalent)

E43.2: 6 residues within 4Å: Chain A: Q.61, P.62, N.63, Q.100, K.103 Chain B: K.54 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:Q.61, A:N.63, A:Q.100, A:K.103, A:K.103, B:K.54 E43.6: 6 residues within 4Å: Chain A: K.54 Chain B: Q.61, P.62, N.63, Q.100, K.103 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.61, B:N.63, B:Q.100, B:K.103, B:K.103, A:K.54

4 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: F.112, Q.115, W.118 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.113 Water bridges: A:L.120 NA.4: 5 residues within 4Å: Chain A: E.205, H.208 Chain B: E.205, H.208 Ligands: NA.8 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:H.208, A:H.208 NA.7: 3 residues within 4Å: Chain B: F.112, Q.115, W.118 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.113 Water bridges: B:L.120 NA.8: 5 residues within 4Å: Chain A: E.205, H.208 Chain B: E.205, H.208 Ligands: NA.4 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:H.208, A:H.208

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zebisch, M. et al., Structures of Legionella Pneumophila Ntpdase1 in Complex with Polyoxometallates. Acta Crystallogr.,Sect.D (2014)

Release Date

2014-02-12

Peptides

ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE I

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