SMTL ID : 4bwe.4 (3 other biounits)

Crystal structure of C-terminally truncated glypican-1 after controlled dehydration to 86 percent relative humidity

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.46 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: D.108, Q.111, H.112, N.115, R.148 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Q.111 Hydrogen bonds: A:N.115

2 x CA: CALCIUM ION(Non-covalent)

CA.2: 2 residues within 4Å: Chain A: I.436, E.442 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:I.436, A:E.442, A:E.442, H2O.3, H2O.3 CA.3: 2 residues within 4Å: Chain A: D.387, D.390 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.387, A:D.390, H2O.3, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Awad, W. et al., Improvements in the order, isotropy and electron density of glypican-1 crystals by controlled dehydration. Acta Crystallogr. D Biol. Crystallogr. (2013)

Release Date

2013-12-18

Peptides

Glypican-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Glypican-1

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