SMTL ID : 4bwt.1

Three-dimensional structure of Paracoccus pantotrophus pseudoazurin at pH 6.5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

homo-tetramer

Ligands

4 x CU: COPPER (II) ION(Non-covalent)

CU.1: 4 residues within 4Å: Chain A: H.40, C.78, H.81, M.86 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.40, A:C.78, A:H.81 CU.4: 4 residues within 4Å: Chain B: H.40, C.78, H.81, M.86 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.40, B:C.78, B:H.81 CU.7: 4 residues within 4Å: Chain C: H.40, C.78, H.81, M.86 3 PLIP interactions: 3 interactions with chain C Metal complexes: C:H.40, C:C.78, C:H.81 CU.10: 4 residues within 4Å: Chain D: H.40, C.78, H.81, M.86 3 PLIP interactions: 3 interactions with chain D Metal complexes: D:H.40, D:C.78, D:H.81

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: S.13, G.14, A.15, K.110, R.114 Chain B: N.123 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.15 Water bridges: A:R.114, A:R.114 Salt bridges: A:K.110, A:R.114 SO4.3: 5 residues within 4Å: Chain A: E.4, H.6 Chain D: E.4, H.6 Ligands: SO4.9 3 PLIP interactions: 2 interactions with chain D, 1 interactions with chain A Hydrogen bonds: D:E.4 Salt bridges: D:H.6, A:H.6 SO4.5: 4 residues within 4Å: Chain B: D.37, K.38 Chain C: A.1, T.2 6 PLIP interactions: 4 interactions with chain B, 2 interactions with chain C Hydrogen bonds: B:K.38, C:T.2 Water bridges: B:N.9, B:T.36, C:A.1 Salt bridges: B:K.38 SO4.6: 5 residues within 4Å: Chain A: N.123 Chain B: G.14, A.15, K.110, R.114 6 PLIP interactions: 5 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:A.15, A:N.123 Water bridges: B:R.114, B:R.114 Salt bridges: B:K.110, B:R.114 SO4.8: 6 residues within 4Å: Chain C: S.13, G.14, A.15, K.110, R.114 Chain D: N.123 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:A.15 Water bridges: C:R.114, C:R.114 Salt bridges: C:K.110, C:R.114 SO4.9: 5 residues within 4Å: Chain B: E.4, H.6 Chain C: E.4, H.6 Ligands: SO4.3 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:E.4 Water bridges: B:H.6 Salt bridges: B:H.6, C:H.6 SO4.11: 4 residues within 4Å: Chain A: A.1, T.2 Chain D: D.37, K.38 6 PLIP interactions: 4 interactions with chain D, 2 interactions with chain A Hydrogen bonds: D:K.38, A:T.2 Water bridges: D:N.9, D:T.36, A:A.1 Salt bridges: D:K.38 SO4.12: 5 residues within 4Å: Chain C: N.123 Chain D: G.14, A.15, K.110, R.114 6 PLIP interactions: 1 interactions with chain C, 5 interactions with chain D Hydrogen bonds: C:N.123, D:A.15 Water bridges: D:R.114, D:R.114 Salt bridges: D:K.110, D:R.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Freire, F. et al., Exploring the Surface Determinants of Paracoccus Pantotrophus Pseudoazurin. To be Published

Release Date

2014-07-16

Peptides

PSEUDOAZURIN: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

PSEUDOAZURIN

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