SMTL ID : 4bx9.1 (1 other biounit)

Human Vps33A in complex with a fragment of human Vps16

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.1: 6 residues within 4Å: Chain A: V.19, S.141, L.142, D.143, L.144, T.181 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.143, A:L.144

1 x LMR: (2S)-2-hydroxybutanedioic acid(Non-covalent)

LMR.2: 4 residues within 4Å: Chain A: R.116, S.118, L.119, L.120 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.119, A:L.120 Salt bridges: A:R.116, A:R.116

1 x MLA: MALONIC ACID(Non-covalent)

MLA.3: 5 residues within 4Å: Chain B: G.70, H.71, N.72, K.73, R.74 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.72, B:K.73, B:R.74 Salt bridges: B:H.71, B:R.74

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Graham, S.C. et al., Structural basis of Vps33A recruitment to the human HOPS complex by Vps16. Proc. Natl. Acad. Sci. U.S.A. (2013)

Release Date

2013-07-24

Peptides

VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 33A: A
VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 16 HOMOLOG: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 33A

VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 16 HOMOLOG

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