SMTL ID : 4bxs.1

Crystal Structure of the Prothrombinase Complex from the Venom of Pseudonaja Textilis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.32 Å

Oligo State

hetero-1-1-mer

Ligands

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.1: 2 residues within 4Å: Chain B: D.374, N.376 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA- MAN- MAN- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN-MAN-MAN.2: 13 residues within 4Å: Chain B: D.192, S.202, L.203, Q.204, Y.205, A.211, N.212, S.236, K.287, Q.290, A.291, G.292, D.592 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.203, B:L.203, B:Y.205, B:Q.290, B:Y.205, B:Y.205

2 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 1 residues within 4Å: Chain B: N.126 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 1 residues within 4Å: Chain B: N.914 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain B: N.1150, V.1234 No protein-ligand interaction detected (PLIP)

2 x CA: CALCIUM ION(Non-covalent)

CA.6: 5 residues within 4Å: Chain B: K.94, S.99, E.109, D.112, D.113 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:K.94, B:E.109, B:D.112, B:D.113 CA.7: 6 residues within 4Å: Chain B: K.890, E.893, R.895, F.905, D.908, D.909 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:K.890, B:F.905, B:D.908, B:D.909, H2O.4

1 x CU: COPPER (II) ION(Non-covalent)

CU.8: 5 residues within 4Å: Chain B: H.86, H.148, H.1055, E.1095, E.1097 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.148, B:H.1055, B:E.1095

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lechtenberg, B.C. et al., Crystal Structure of the Prothrombinase Complex from the Venom of Pseudonaja Textilis. Blood (2013)

Release Date

2013-07-31

Peptides

FACTOR X-LIKE PROTEASE: A
VENOM PROTHROMBIN ACTIVATOR PSEUTARIN-C NON-CATALYTIC SUBUNIT: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
V

FACTOR X-LIKE PROTEASE

VENOM PROTHROMBIN ACTIVATOR PSEUTARIN-C NON-CATALYTIC SUBUNIT

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