SMTL ID : 4by6.1 (1 other biounit)

Yeast Not1-Not2-Not5 complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-oligomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1: 3 residues within 4Å: Chain A: D.375, D.378, D.391 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.375, A:D.378, A:D.378, A:D.391

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: R.167, T.168, H.169, N.170 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.169, A:N.170 Salt bridges: A:R.167

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain B: E.126, Y.129, M.191 Chain C: P.114, T.115, S.116, F.119 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:E.126, C:S.116

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.4: 3 residues within 4Å: Chain C: C.213, Y.236, K.240 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.240

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bhaskar, V. et al., Structure and RNA-Binding Properties of the not1-not2-not5 Module of the Yeast Ccr4-not Complex. Nat.Struct.Mol.Biol. (2013)

Release Date

2013-10-16

Peptides

GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1: A
GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 2: B
GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 5: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
E

C
F

GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 1

GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 2

GENERAL NEGATIVE REGULATOR OF TRANSCRIPTION SUBUNIT 5

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