SMTL ID : 4bzp.1

Structure of the Mycobacterium tuberculosis APS kinase CysC in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.47 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 14 residues within 4Å: Chain A: L.13, S.14, G.15, S.16, G.17, K.18, S.19, S.20, R.121, P.123, R.159, S.160, I.161, Q.164 25 PLIP interactions: 25 interactions with chain A Hydrogen bonds: A:G.15, A:S.16, A:G.17, A:K.18, A:S.19, A:S.19, A:S.20, A:S.20, A:R.121, A:R.159 Water bridges: A:K.18, A:K.18, A:S.19, A:S.19, A:S.20, A:R.121, A:R.121, A:K.124, A:K.124, A:I.161, A:Q.164, A:Q.164 Salt bridges: A:K.18, A:K.124 pi-Cation interactions: A:R.121 ADP.6: 14 residues within 4Å: Chain B: L.13, S.14, G.15, S.16, G.17, K.18, S.19, S.20, R.121, P.123, R.159, S.160, I.161, Q.164 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:G.15, B:S.16, B:G.17, B:K.18, B:S.19, B:S.20, B:S.20, B:R.121, B:R.121, B:R.159, B:I.161, B:Q.164 Water bridges: B:K.18, B:K.18 Salt bridges: B:K.18 pi-Cation interactions: B:R.121

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 2 residues within 4Å: Chain A: K.28, D.162 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.28, A:D.162 EDO.3: 4 residues within 4Å: Chain A: A.128, K.129, A.132, E.134 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.134 Water bridges: A:E.134 EDO.4: 6 residues within 4Å: Chain A: L.13, F.110, D.112, T.113, Y.145, R.147 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.113, A:R.147 Water bridges: A:T.113 EDO.5: 4 residues within 4Å: Chain A: P.151, D.152, L.153, R.154 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:P.151, A:R.154, A:R.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Poyraz, O. et al., Crystal Structures of the Kinase Domain of the Sulfate-Activating Complex in Mycobacterium Tuberculosis. Plos One (2015)

Release Date

2014-08-06

Peptides

BIFUNCTIONAL ENZYME CYSN/CYSC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

BIFUNCTIONAL ENZYME CYSN/CYSC