SMTL ID : 4c08.1

Crystal structure of M. musculus protein arginine methyltransferase PRMT6 with CaCl2 at 1.34 Angstroms

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.34 Å

Oligo State

homo-dimer

Ligands

2 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.1: 7 residues within 4Å: Chain A: L.79, L.82, K.83, W.85, Q.109, A.110, G.111 No protein-ligand interaction detected (PLIP) 1PE.7: 7 residues within 4Å: Chain B: L.79, L.82, K.83, W.85, Q.109, A.110, G.111 No protein-ligand interaction detected (PLIP)

10 x CA: CALCIUM ION(Non-covalent)

CA.2: 4 residues within 4Å: Chain A: E.162, M.164, H.324, W.325 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.162, A:M.164, H2O.5, H2O.5, H2O.5 CA.3: 1 residues within 4Å: Chain A: G.279 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:G.279, H2O.9, H2O.10, H2O.10, H2O.10 CA.4: 2 residues within 4Å: Chain A: R.259, F.260 5 PLIP interactions: 5 Ligand-Water interactions Metal complexes: H2O.9, H2O.9, H2O.9, H2O.9, H2O.9 CA.5: 2 residues within 4Å: Chain A: H.170, E.171 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:E.171, H2O.6, H2O.6, H2O.6, H2O.6 CA.6: 3 residues within 4Å: Chain A: Q.246, D.247, K.326 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.247, H2O.8, H2O.8, H2O.8 CA.8: 4 residues within 4Å: Chain B: E.162, M.164, H.324, W.325 5 PLIP interactions: 2 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:E.162, B:M.164, H2O.17, H2O.17, H2O.18 CA.9: 1 residues within 4Å: Chain B: G.279 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:G.279, H2O.21, H2O.22, H2O.22, H2O.22 CA.10: 2 residues within 4Å: Chain B: R.259, F.260 5 PLIP interactions: 5 Ligand-Water interactions Metal complexes: H2O.21, H2O.21, H2O.21, H2O.21, H2O.21 CA.11: 2 residues within 4Å: Chain B: H.170, E.171 5 PLIP interactions: 1 interactions with chain B, 4 Ligand-Water interactions Metal complexes: B:E.171, H2O.18, H2O.18, H2O.18, H2O.18 CA.12: 3 residues within 4Å: Chain B: Q.246, D.247, K.326 4 PLIP interactions: 1 interactions with chain B, 3 Ligand-Water interactions Metal complexes: B:D.247, H2O.20, H2O.20, H2O.20

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bonnefond, L. et al., Functional Insights from High Resolution Structures of Mouse Protein Arginine Methyltransferase 6. J.Struct.Biol. (2015)

Release Date

2014-07-30

Peptides

PROTEIN ARGININE N-METHYLTRANSFERASE 6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROTEIN ARGININE N-METHYLTRANSFERASE 6

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