SMTL ID : 4c0w.1

The crystal strucuture of native PpAzoR

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 23 residues within 4Å: Chain A: S.9, I.10, L.11, S.15, A.16, S.17, R.18, P.94, M.95, Y.96, N.97, F.98, T.139, A.140, G.141, G.142, H.144, L.177, A.178, R.184 Chain B: F.50, L.55 Ligands: 12P.2 23 PLIP interactions: 22 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:Y.96, A:Y.96, A:Y.96, B:F.50 Hydrogen bonds: A:S.9, A:S.15, A:A.16, A:S.17, A:M.95, A:Y.96, A:N.97, A:F.98, A:T.139, A:T.139, A:T.139, A:G.141, A:G.142 Water bridges: A:H.144, A:H.144, A:H.144, A:R.184, A:R.184, A:R.184 FMN.4: 23 residues within 4Å: Chain A: F.50, L.55 Chain B: S.9, I.10, L.11, S.15, A.16, S.17, R.18, P.94, M.95, Y.96, N.97, F.98, T.139, A.140, G.141, G.142, H.144, L.177, A.178, R.184 Ligands: 12P.5 23 PLIP interactions: 22 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:Y.96, B:Y.96, B:Y.96, A:F.50 Hydrogen bonds: B:S.9, B:S.15, B:A.16, B:S.17, B:M.95, B:Y.96, B:N.97, B:F.98, B:T.139, B:T.139, B:T.139, B:G.141, B:G.142 Water bridges: B:H.144, B:H.144, B:H.144, B:R.184, B:R.184, B:R.184

4 x 12P: DODECAETHYLENE GLYCOL(Non-covalent)

12P.2: 11 residues within 4Å: Chain A: N.97, F.98, G.141, G.142, A.178, Y.179 Chain B: A.112, F.118, Y.120, F.163 Ligands: FMN.1 3 PLIP interactions: 3 interactions with chain B Water bridges: B:Y.120, B:Y.120, B:Y.120 12P.3: 4 residues within 4Å: Chain A: A.52, L.55, V.56, G.59 No protein-ligand interaction detected (PLIP) 12P.5: 11 residues within 4Å: Chain A: A.112, F.118, Y.120, F.163 Chain B: N.97, F.98, G.141, G.142, A.178, Y.179 Ligands: FMN.4 3 PLIP interactions: 3 interactions with chain A Water bridges: A:Y.120, A:Y.120, A:Y.120 12P.6: 4 residues within 4Å: Chain B: A.52, L.55, V.56, G.59 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Goncalves, A.M.D. et al., The Crystal Structure of Pseudomonas Putida Azor: The Active Site Revisited. FEBS J. (2013)

Release Date

2013-10-30

Peptides

FMN-DEPENDENT NADH-AZOREDUCTASE 1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

FMN-DEPENDENT NADH-AZOREDUCTASE 1

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