SMTL ID : 4c1w.1

Carbohydrate binding domain from Streptococcus pneumoniae NanA sialidase complexed with 3'-sialyllactose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

monomer

Ligands

1 x GLC- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose(Non-functional Binders)

GLC-GAL-SIA.1: 8 residues within 4Å: Chain A: F.50, Y.65, E.78, R.80, Q.86, N.92, R.157, W.163 7 PLIP interactions: 7 interactions with chain A Water bridges: A:R.80, A:R.80 Hydrophobic interactions: A:F.50 Hydrogen bonds: A:E.78, A:Q.86, A:N.92 Salt bridges: A:R.80, A:R.157

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.2: 4 residues within 4Å: Chain A: P.113, T.114, A.115, P.118 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.113 Water bridges: A:A.115

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Connaris, H. et al., Prevention of Influenza by Targeting Host Receptors Using Engineered Proteins. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-08-27

Peptides

NEURAMINIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NEURAMINIDASE

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