SMTL ID : 4c24.1

L-fuculose 1-phosphate aldolase

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-tetramer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: G.30, H.98, H.100, H.160 Chain B: Y.119 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:G.30, A:H.98, A:H.100, A:H.160, H2O.1 ZN.7: 5 residues within 4Å: Chain B: G.30, H.98, H.100, H.160 Chain D: Y.119 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:G.30, B:H.98, B:H.100, B:H.160, H2O.5 ZN.13: 5 residues within 4Å: Chain A: Y.119 Chain C: G.30, H.98, H.100, H.160 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:G.30, C:H.98, C:H.100, C:H.160, H2O.9 ZN.19: 5 residues within 4Å: Chain C: Y.119 Chain D: G.30, H.98, H.100, H.160 5 PLIP interactions: 4 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:G.30, D:H.98, D:H.100, D:H.160, H2O.13

4 x NI: NICKEL (II) ION(Non-covalent)

NI.2: 4 residues within 4Å: Chain A: G.1, S.2, H.3, M.4 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.3 NI.8: 4 residues within 4Å: Chain B: G.1, S.2, H.3, M.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.3 NI.14: 4 residues within 4Å: Chain C: G.1, S.2, H.3, M.4 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:H.3 NI.20: 4 residues within 4Å: Chain D: G.1, S.2, H.3, M.4 1 PLIP interactions: 1 interactions with chain D Metal complexes: D:H.3

8 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: T.102, Y.103, K.184 Chain B: K.184 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:K.184, B:K.184 SO4.4: 7 residues within 4Å: Chain A: G.30, G.31, N.32, S.48, G.49, S.77, S.78 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.32, A:G.49, A:S.77, A:S.78 Water bridges: A:G.30 SO4.9: 4 residues within 4Å: Chain B: T.102, Y.103, K.184 Chain D: K.184 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain B Salt bridges: D:K.184, B:K.184 SO4.10: 7 residues within 4Å: Chain B: G.30, G.31, N.32, S.48, G.49, S.77, S.78 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.32, B:G.49, B:S.77, B:S.78 Water bridges: B:G.30 SO4.15: 4 residues within 4Å: Chain A: K.184 Chain C: T.102, Y.103, K.184 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Salt bridges: C:K.184, A:K.184 SO4.16: 7 residues within 4Å: Chain C: G.30, G.31, N.32, S.48, G.49, S.77, S.78 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:N.32, C:G.49, C:S.77, C:S.78 Water bridges: C:G.30 SO4.21: 4 residues within 4Å: Chain C: K.184 Chain D: T.102, Y.103, K.184 2 PLIP interactions: 1 interactions with chain D, 1 interactions with chain C Salt bridges: D:K.184, C:K.184 SO4.22: 7 residues within 4Å: Chain D: G.30, G.31, N.32, S.48, G.49, S.77, S.78 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:N.32, D:G.49, D:S.77, D:S.78 Water bridges: D:G.30

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.5: 3 residues within 4Å: Chain A: K.126, R.129, R.152 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.126, A:R.129, A:R.152, A:R.152 EDO.11: 3 residues within 4Å: Chain B: K.126, R.129, R.152 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.126, B:R.129, B:R.152, B:R.152 EDO.17: 3 residues within 4Å: Chain C: K.126, R.129, R.152 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.126, C:R.129, C:R.152, C:R.152 EDO.23: 3 residues within 4Å: Chain D: K.126, R.129, R.152 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:K.126, D:R.129, D:R.152, D:R.152

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 3 residues within 4Å: Chain A: T.138, K.139, E.140 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.139, A:K.139, A:E.140 Water bridges: A:T.138 GOL.12: 3 residues within 4Å: Chain B: T.138, K.139, E.140 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.139, B:K.139, B:E.140 Water bridges: B:T.138 GOL.18: 3 residues within 4Å: Chain C: T.138, K.139, E.140 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.139, C:K.139, C:E.140 Water bridges: C:T.138 GOL.24: 3 residues within 4Å: Chain D: T.138, K.139, E.140 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:K.139, D:K.139, D:E.140 Water bridges: D:T.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Higgins, M.A. et al., Structural and Functional Analysis of Fucose-Processing Enzymes from Streptococcus Pneumoniae. J.Mol.Biol. (2014)

Release Date

2013-12-11

Peptides

L-FUCULOSE PHOSPHATE ALDOLASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

L-FUCULOSE PHOSPHATE ALDOLASE