SMTL ID : 4c2i.1 (3 other biounits)

Cryo-EM structure of Dengue virus serotype 1 complexed with Fab fragments of human antibody 1F4

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY 6.00 Å

Oligo State

hetero-3-3-2-2-mer

Ligands

2 x NAG- NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-functional Binders)

NAG-NAG-NAG.1: 0 residues within 4Å: (No contacts) Protein-ligand interaction information (PLIP) not available NAG-NAG-NAG.4: 1 residues within 4Å: Chain E: N.67 Protein-ligand interaction information (PLIP) not available

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Non-functional Binders)

NAG-NAG.2: 1 residues within 4Å: Chain J: S.80 Protein-ligand interaction information (PLIP) not available NAG-NAG.3: 0 residues within 4Å: (No contacts) Protein-ligand interaction information (PLIP) not available NAG-NAG.5: 1 residues within 4Å: Chain E: N.153 Protein-ligand interaction information (PLIP) not available

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)

NAG.6: 0 residues within 4Å: (No contacts) Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fibriansah, G. et al., A Potent Anti-Dengue Human Antibody Preferentially Recognizes the Conformation of E Protein Monomers Assembled on the Virus Surface. Embo Mol.Med. (2014)

Release Date

2014-01-29

Peptides

ENVELOPE PROTEIN: ACE
POLYPROTEIN: BDF
HEAVY CHAIN FAB FRAGMENT OF ANTIBODY 1F4: GI
LIGHT CHAIN FAB FRAGMENT OF ANTIBODY 1F4: HJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

G
H

I
M

H
L

J
N

ENVELOPE PROTEIN

POLYPROTEIN

HEAVY CHAIN FAB FRAGMENT OF ANTIBODY 1F4

LIGHT CHAIN FAB FRAGMENT OF ANTIBODY 1F4