SMTL ID : 4c2l.1

Crystal structure of endo-xylogalacturonan hydrolase from Aspergillus tubingensis

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: Y.198, Y.221, T.223, N.250, Y.252, N.283 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.252 Hydrogen bonds: A:T.223, A:T.223

1 x MAN: alpha-D-mannopyranose(Post Translational Modification)

MAN.2: 4 residues within 4Å: Chain A: V.18, T.20, V.49, P.51 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: T.230, N.260, N.293 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.230 Hydrogen bonds: A:N.260, A:N.293

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 5 residues within 4Å: Chain A: K.216, G.238, S.239, K.268, Y.304 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.239, A:Y.304 Water bridges: A:D.211, A:K.216, A:K.216, A:G.238, A:S.239, A:S.239, A:K.268 Salt bridges: A:K.216, A:K.268 SO4.5: 2 residues within 4Å: Chain A: R.90, T.91 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:T.91 Water bridges: A:R.90, A:R.90, A:T.91, A:T.91, A:T.91, A:A.92 Salt bridges: A:R.90 SO4.6: 3 residues within 4Å: Chain A: R.150, K.152 Ligands: GOL.11 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.150, A:R.150, A:R.150 Salt bridges: A:R.150, A:K.152 SO4.7: 4 residues within 4Å: Chain A: D.210, H.233, K.268, Y.304 14 PLIP interactions: 14 interactions with chain A Water bridges: A:D.210, A:H.233, A:K.263, A:K.268, A:K.268, A:K.268, A:Q.301, A:Q.301, A:Q.301, A:Q.301, A:Y.304 Salt bridges: A:H.233, A:K.263, A:K.268 SO4.8: 2 residues within 4Å: Chain A: N.287, D.288 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.287, A:N.287 Water bridges: A:T.254, A:S.327, A:S.327, A:S.327, A:S.327 SO4.9: 3 residues within 4Å: Chain A: Y.221, K.249, N.250 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.250, A:N.250, A:S.282 Water bridges: A:K.249, A:K.249 Salt bridges: A:K.249 SO4.10: 1 residues within 4Å: Chain A: N.44 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.44 Water bridges: A:A.17, A:S.41, A:N.44

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.11: 4 residues within 4Å: Chain A: D.114, K.152, K.180 Ligands: SO4.6 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.152, A:K.180 Water bridges: A:K.79, A:K.79, A:D.114, A:D.114

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rozeboom, H.J. et al., Crystal Structure of Endo-Xylogalacturonan Hydrolase from Aspergillus Tubingensis. FEBS J. (2013)

Release Date

2013-09-25

Peptides

ENDO-XYLOGALACTURONAN HYDROLASE A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDO-XYLOGALACTURONAN HYDROLASE A