SMTL ID : 4c2t.1 (1 other biounit)

Crystal structure of full length Deinococcus radiodurans UvrD in complex with DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.00 Å

Oligo State

homo-dimer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: T.39, D.227, E.228 Ligands: ANP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.39, A:E.228 MG.3: 4 residues within 4Å: Chain B: T.39, D.227, E.228 Ligands: ANP.4 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:T.39

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 18 residues within 4Å: Chain A: A.12, L.13, N.14, Q.17, A.34, G.35, S.36, G.37, K.38, T.39, R.40, Q.258, Y.290, R.291, G.575, E.577, R.617 Ligands: MG.1 23 PLIP interactions: 23 interactions with chain A Hydrogen bonds: A:N.14, A:Q.17, A:Q.17, A:G.35, A:S.36, A:G.37, A:K.38, A:K.38, A:K.38, A:K.38, A:T.39, A:T.39, A:R.40, A:R.40, A:Q.258, A:R.291, A:R.291, A:R.617, A:R.617 Salt bridges: A:R.291 pi-Stacking: A:Y.290, A:Y.290 pi-Cation interactions: A:R.40 ANP.4: 19 residues within 4Å: Chain B: A.12, L.13, N.14, Q.17, G.33, A.34, G.35, S.36, G.37, K.38, T.39, R.40, E.228, Q.258, Y.290, R.291, E.577, R.617 Ligands: MG.3 25 PLIP interactions: 25 interactions with chain B Hydrogen bonds: B:N.14, B:Q.17, B:Q.17, B:G.35, B:S.36, B:G.37, B:K.38, B:K.38, B:K.38, B:T.39, B:T.39, B:R.40, B:Q.258, B:Q.258, B:Q.258, B:R.291, B:R.291, B:E.577, B:R.617, B:R.617 Salt bridges: B:R.291 pi-Stacking: B:Y.290, B:Y.290 pi-Cation interactions: B:R.40, B:R.40

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stelter, M. et al., Structural and Mechanistic Insight Into DNA Unwinding by Deinococcus Radiodurans Uvrd. Plos One (2013)

Release Date

2013-10-30

Peptides

DNA HELICASE II: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

DNA HELICASE II

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