SMTL ID : 4c30.1 (1 other biounit)

Crystal structure of Deinococcus radiodurans UvrD in complex with DNA, form 2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.1: 20 residues within 4Å: Chain A: A.12, L.13, N.14, Q.17, G.33, A.34, G.35, S.36, G.37, K.38, T.39, R.40, E.228, Q.258, Y.290, R.291, G.575, E.577, R.617 Ligands: MG.2 24 PLIP interactions: 24 interactions with chain A Hydrogen bonds: A:N.14, A:Q.17, A:Q.17, A:G.35, A:S.36, A:G.37, A:K.38, A:K.38, A:K.38, A:K.38, A:T.39, A:R.40, A:R.40, A:Q.230, A:R.291, A:R.291, A:E.577, A:R.617, A:R.617 Water bridges: A:T.39 Salt bridges: A:R.291 pi-Stacking: A:Y.290, A:Y.290 pi-Cation interactions: A:R.40

3 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain A: T.39 Ligands: ANP.1 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.39, H2O.1, H2O.1, H2O.1 MG.3: 3 residues within 4Å: Chain A: D.118, D.119, D.391 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:D.118 MG.4: 2 residues within 4Å: Chain B: R.396, D.397 6 PLIP interactions: 1 interactions with chain B, 5 Ligand-Water interactions Metal complexes: B:D.397, H2O.1, H2O.1, H2O.1, H2O.2, H2O.2

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stelter, M. et al., Structural and Mechanistic Insight Into DNA Unwinding by Deinococcus Radiodurans Uvrd. Plos One (2013)

Release Date

2013-10-30

Peptides

DNA HELICASE II: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
D

DNA HELICASE II

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