SMTL ID : 4c6o.1

Crystal structure of the dihydroorotase domain of human CAD C1613S mutant in apo-form at pH 6.0

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: H.18, H.20, M.50, K.103, H.161, D.233 Ligands: ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.18, A:H.20, A:D.233, H2O.3 ZN.2: 6 residues within 4Å: Chain A: H.18, K.103, Y.105, H.137, H.161 Ligands: ZN.1 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.137, A:H.161, H2O.3 ZN.7: 7 residues within 4Å: Chain B: H.18, H.20, M.50, K.103, H.161, D.233 Ligands: ZN.8 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.18, B:H.20, B:D.233, H2O.18 ZN.8: 6 residues within 4Å: Chain B: H.18, K.103, Y.105, H.137, H.161 Ligands: ZN.7 3 PLIP interactions: 2 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.137, B:H.161, H2O.18

8 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 7 residues within 4Å: Chain A: H.20, R.22, N.52, A.235, H.237, P.249, G.250 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.22, A:R.22, A:N.52, A:H.237 FMT.4: 7 residues within 4Å: Chain A: P.133, I.134, R.155, S.156, V.157, H.158, T.182 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:I.134, A:I.134, A:R.155 Water bridges: A:S.156, A:S.156 FMT.5: 3 residues within 4Å: Chain A: H.281, R.284, R.285 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.281, A:R.284 FMT.6: 9 residues within 4Å: Chain A: V.17, H.18, M.50, F.81, V.135, H.158, S.160, E.184, F.287 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.18, A:H.158, A:S.160, A:E.184 FMT.9: 7 residues within 4Å: Chain B: H.20, R.22, N.52, A.235, H.237, P.249, G.250 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.22, B:R.22, B:N.52, B:H.237 FMT.10: 7 residues within 4Å: Chain B: P.133, I.134, R.155, S.156, V.157, H.158, T.182 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:I.134, B:I.134, B:R.155 Water bridges: B:S.156, B:S.156 FMT.11: 3 residues within 4Å: Chain B: H.281, R.284, R.285 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.281, B:R.284 FMT.12: 9 residues within 4Å: Chain B: V.17, H.18, M.50, F.81, V.135, H.158, S.160, E.184, F.287 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:H.18, B:H.158, B:S.160, B:E.184

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grande-Garcia, A. et al., Structure, Functional Characterization and Evolution of the Dihydroorotase Domain of Human Cad. Structure (2014)

Release Date

2014-02-05

Peptides

CAD PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

CAD PROTEIN

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