SMTL ID : 4c6s.1

Crystal structure of the TIR domain from the Arabidopsis Thaliana disease resistance protein RRS1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: Y.98, G.99, D.100, S.122, R.123, E.125, C.126, D.128 Chain B: Y.18 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.125, A:C.126, A:C.126, A:D.128 Water bridges: A:R.123 GOL.2: 3 residues within 4Å: Chain A: F.144, Y.145, V.146 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.146 GOL.8: 9 residues within 4Å: Chain A: Y.18 Chain B: Y.98, G.99, D.100, S.122, R.123, E.125, C.126, D.128 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:E.125, B:C.126, B:C.126, B:D.128 Water bridges: B:R.123 GOL.9: 3 residues within 4Å: Chain B: F.144, Y.145, V.146 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.146

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 6 residues within 4Å: Chain A: V.16, P.65, G.66, N.67, Y.98, G.99 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.67, A:Y.98 Water bridges: A:D.100 SO4.4: 3 residues within 4Å: Chain A: R.104, R.123, K.124 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.124 Salt bridges: A:R.104, A:R.123, A:K.124 SO4.5: 4 residues within 4Å: Chain A: H.120, Q.121, R.123 Ligands: NA.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Q.121 Water bridges: A:Q.121, A:E.134 Salt bridges: A:R.123 SO4.10: 6 residues within 4Å: Chain B: V.16, P.65, G.66, N.67, Y.98, G.99 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.67, B:Y.98 Water bridges: B:D.100 SO4.11: 3 residues within 4Å: Chain B: R.104, R.123, K.124 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.124 Salt bridges: B:R.104, B:R.123, B:K.124 SO4.12: 4 residues within 4Å: Chain B: H.120, Q.121, R.123 Ligands: NA.13 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:Q.121 Water bridges: B:Q.121, B:E.134 Salt bridges: B:R.123

4 x NA: SODIUM ION(Non-functional Binders)

NA.6: 3 residues within 4Å: Chain A: H.120, E.134 Ligands: SO4.5 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.120 NA.7: 2 residues within 4Å: Chain A: E.26, R.29 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Water bridges: B:S.129 Hydrogen bonds: A:R.29 NA.13: 3 residues within 4Å: Chain B: H.120, E.134 Ligands: SO4.12 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:H.120, B:E.134 NA.14: 2 residues within 4Å: Chain B: E.26, R.29 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:E.26, B:R.29 Water bridges: A:S.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, S.J. et al., Structural Basis for Assembly and Function of a Heterodimeric Plant Immune Receptor. Science (2014)

Release Date

2014-05-28

Peptides

PROBABLE WRKY TRANSCRIPTION FACTOR 52: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

PROBABLE WRKY TRANSCRIPTION FACTOR 52