- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 4 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
IPA.2: 5 residues within 4Å:- Chain A: Y.149, M.152, N.153
- Chain B: L.228
- Ligands: M7U.13
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain B- Hydrophobic interactions: A:Y.149, A:Y.149, A:M.152, B:L.228
IPA.3: 3 residues within 4Å:- Chain A: D.92, Y.105
- Ligands: M7U.8
2 PLIP interactions:2 interactions with chain A- Water bridges: A:D.92, A:D.92
IPA.5: 4 residues within 4Å:- Chain A: D.306, V.308, R.309
- Chain B: R.184
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.308
- Hydrogen bonds: A:D.306
IPA.11: 5 residues within 4Å:- Chain B: S.234, R.237, A.238, M.239, T.241
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:M.239, B:M.239
- 2 x K: POTASSIUM ION(Non-covalent)
K.6: 6 residues within 4Å:- Chain A: N.332, A.333, H.334, E.377, N.422, N.423
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:N.332, A:A.333, A:E.377, A:N.423
K.9: 6 residues within 4Å:- Chain B: N.332, A.333, H.334, E.377, N.422, N.423
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:N.332, B:A.333, B:E.377, B:N.423
- 2 x TLJ: (5R)-4-hydroxy-5-methyl-5-[(1E)-2-methylbuta-1,3-dien-1-yl]-3-propylthiophen-2(5H)-one(Non-covalent)
TLJ.7: 16 residues within 4Å:- Chain A: Q.194, F.260, H.299, M.300, V.301, A.302, P.303, H.334, T.336, H.368, I.370, F.425, G.426, F.427, G.428, G.429
8 PLIP interactions:8 interactions with chain A- Hydrophobic interactions: A:Q.194, A:F.260, A:F.260, A:T.336, A:I.370, A:F.425, A:F.427
- Water bridges: A:V.301
TLJ.12: 15 residues within 4Å:- Chain B: Q.194, F.260, H.299, M.300, V.301, A.302, P.303, H.334, T.336, H.368, I.370, F.425, G.426, F.427, G.429
11 PLIP interactions:11 interactions with chain B- Hydrophobic interactions: B:Q.194, B:F.260, B:F.260, B:P.303, B:P.303, B:T.336, B:I.370, B:F.425, B:F.427, B:F.427
- Water bridges: B:T.338
- 2 x M7U: (2R)-2-(hexadecanoyloxy)-3-{[(10R)-10-methyloctadecanoyl]oxy}propyl phosphate(Non-covalent)
M7U.8: 26 residues within 4Å:- Chain A: Y.105, G.138, L.139, A.142, E.143, V.146, A.193, E.222, G.223, P.224, I.225, E.226, L.228, P.229, A.232, F.233, F.262, G.263, E.264, H.368, I.370
- Chain B: I.145, V.165, I.168, M.169
- Ligands: IPA.3
19 PLIP interactions:15 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: A:Y.105, A:L.139, A:A.142, A:E.143, A:V.146, A:A.193, A:P.224, A:I.225, A:L.228, A:P.229, A:A.232, A:F.233, A:F.262, A:E.264, A:I.370, B:I.145, B:V.165, B:I.168, B:M.169
M7U.13: 23 residues within 4Å:- Chain A: V.165, I.168, M.169
- Chain B: Y.105, G.138, G.140, A.142, E.143, A.193, E.222, G.223, P.224, I.225, E.226, L.228, P.229, A.232, F.262, G.263, E.264, H.368, I.370
- Ligands: IPA.2
17 PLIP interactions:15 interactions with chain B, 2 interactions with chain A- Hydrophobic interactions: B:Y.105, B:A.142, B:E.143, B:A.193, B:P.224, B:I.225, B:L.228, B:L.228, B:P.229, B:A.232, B:F.262, B:F.262, B:E.264, B:I.370, B:I.370, A:I.168, A:M.169
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schiebel, J. et al., Structural Basis for the Recognition of Mycolic Acid Precursors by Kasa, a Condensing Enzyme and Drug Target from Mycobacterium Tuberculosis. J.Biol.Chem. (2013)
- Release Date
- 2013-10-09
- Peptides
- 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-dimer
- Ligands
- 3 x GOL: GLYCEROL(Non-functional Binders)
- 4 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)
- 2 x K: POTASSIUM ION(Non-covalent)
- 2 x TLJ: (5R)-4-hydroxy-5-methyl-5-[(1E)-2-methylbuta-1,3-dien-1-yl]-3-propylthiophen-2(5H)-one(Non-covalent)
- 2 x M7U: (2R)-2-(hexadecanoyloxy)-3-{[(10R)-10-methyloctadecanoyl]oxy}propyl phosphate(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Schiebel, J. et al., Structural Basis for the Recognition of Mycolic Acid Precursors by Kasa, a Condensing Enzyme and Drug Target from Mycobacterium Tuberculosis. J.Biol.Chem. (2013)
- Release Date
- 2013-10-09
- Peptides
- 3-OXOACYL-[ACYL-CARRIER-PROTEIN] SYNTHASE 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B