SMTL ID : 4c82.1

IspF (Plasmodium falciparum) unliganded structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-trimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: D.15, H.17, H.67 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.15, A:D.15, A:H.17, A:H.67 ZN.2: 3 residues within 4Å: Chain A: H.159 Chain B: Y.14, E.172 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:E.172, A:H.159, H2O.4 ZN.4: 3 residues within 4Å: Chain B: D.15, H.17, H.67 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.15, B:D.15, B:H.17, B:H.67 ZN.5: 3 residues within 4Å: Chain B: H.159 Chain C: Y.14, E.172 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: C:E.172, B:H.159, H2O.7 ZN.7: 3 residues within 4Å: Chain C: D.15, H.17, H.67 4 PLIP interactions: 4 interactions with chain C Metal complexes: C:D.15, C:D.15, C:H.17, C:H.67 ZN.8: 3 residues within 4Å: Chain A: Y.14, E.172 Chain C: H.159 3 PLIP interactions: 1 interactions with chain A, 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: A:E.172, C:H.159, H2O.11

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 8 residues within 4Å: Chain A: G.163, V.164 Chain B: G.163, V.164 Chain C: G.163, V.164 Ligands: SO4.6, SO4.9 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: C:V.164, A:V.164, B:V.164 SO4.6: 8 residues within 4Å: Chain A: G.163, V.164 Chain B: G.163, V.164 Chain C: G.163, V.164 Ligands: SO4.3, SO4.9 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: C:V.164, A:V.164, B:V.164 SO4.9: 8 residues within 4Å: Chain A: G.163, V.164 Chain B: G.163, V.164 Chain C: G.163, V.164 Ligands: SO4.3, SO4.6 3 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A, 1 interactions with chain B Hydrogen bonds: C:V.164, A:V.164, B:V.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

O Rourke, P.E. et al., Crystal Structures of Ispf from Plasmodium Falciparum and Burkholderia Cenocepacia: Comparisons Inform Antimicrobial Drug Target Assessment. Bmc Struct.Biol. (2014)

Release Date

2014-01-08

Peptides

2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE SYNTHASE

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