SMTL ID : 4c9g.1

Structure of yeast mitochondrial ADP/ATP carrier isoform 2 inhibited by carboxyatractyloside (C2221 crystal form)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

monomer

Ligands

1 x CXT: Carboxyatractyloside(Non-covalent)

CXT.1: 18 residues within 4Å: Chain A: K.38, R.96, N.104, K.108, G.138, S.141, L.142, P.195, G.199, I.200, Y.203, R.204, F.208, S.245, L.248, D.249, R.252, R.253 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.142, A:Y.203, A:Y.203, A:L.248, A:D.249 Hydrogen bonds: A:N.104, A:R.204, A:D.249, A:R.252, A:R.252, A:R.253 Salt bridges: A:K.38, A:K.38, A:R.96, A:K.108, A:K.108, A:R.204

3 x CDL: CARDIOLIPIN(Non-covalent)

CDL.2: 7 residues within 4Å: Chain A: W.87, R.88, G.89, N.90, T.91, L.173, I.174 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.87 Hydrogen bonds: A:G.89, A:N.90, A:T.91, A:T.91, A:L.173, A:I.174 CDL.3: 13 residues within 4Å: Chain A: I.51, G.69, I.70, L.71, T.243, F.285, K.286, G.287, C.288, G.289, A.290, I.292, L.293 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:T.243, A:F.285, A:F.285, A:I.292, A:L.293 Hydrogen bonds: A:I.70, A:L.71, A:G.287, A:C.288, A:G.289, A:A.290 CDL.4: 11 residues within 4Å: Chain A: Y.190, R.191, G.192, F.193, L.194, V.198, L.248, M.255, G.267, A.268, F.269 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.193, A:L.248 Hydrogen bonds: A:R.191, A:G.192, A:F.193, A:A.268, A:F.269

1 x BNG: nonyl beta-D-glucopyranoside(Non-covalent)

BNG.5: 3 residues within 4Å: Chain A: K.119, Y.123, D.212 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.119 Hydrogen bonds: A:D.212

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ruprecht, J.J. et al., Structures of Yeast Mitochondrial Adp/ATP Carriers Support a Domain-Based Alternating-Access Transport Mechanism. Proc.Natl.Acad.Sci.USA (2014)

Release Date

2014-01-22

Peptides

ADP, ATP CARRIER PROTEIN 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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ADP, ATP CARRIER PROTEIN 2

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