- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 14 x SO4: SULFATE ION(Non-functional Binders)
SO4.2: 5 residues within 4Å:- Chain A: E.129, S.138, L.142, K.144
- Ligands: SIA.6
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:E.129, A:S.138
- Water bridges: A:N.136, A:N.136
- Salt bridges: A:K.144
SO4.3: 2 residues within 4Å:- Chain A: K.150, S.151
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.151
- Water bridges: A:N.38
- Salt bridges: A:K.60
SO4.4: 2 residues within 4Å:- Chain A: L.142, K.143
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:E.141, A:K.143
SO4.5: 6 residues within 4Å:- Chain A: R.26, L.27, C.28
- Chain B: F.42, K.44, K.82
8 PLIP interactions:3 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:F.42, A:L.27, A:C.28
- Salt bridges: B:K.44, B:K.82
- Water bridges: A:C.28, A:P.29, A:F.34
SO4.8: 2 residues within 4Å:- Chain A: S.104, T.105
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:T.105
- Water bridges: A:T.105, A:T.105
SO4.9: 2 residues within 4Å:- Chain A: S.107, S.108
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.108, A:S.108, A:S.108
SO4.10: 3 residues within 4Å:- Chain A: K.93, K.94, E.95
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.95
SO4.11: 3 residues within 4Å:- Chain A: N.38, N.67, K.149
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:N.38, A:N.67
- Water bridges: A:K.149, A:K.149, A:K.149, A:K.149
- Salt bridges: A:K.149
SO4.13: 4 residues within 4Å:- Chain B: E.129, S.138, L.142, K.144
2 PLIP interactions:2 interactions with chain B- Water bridges: B:N.136
- Salt bridges: B:K.144
SO4.14: 3 residues within 4Å:- Chain B: N.38, N.67, K.149
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.38, B:N.67
- Water bridges: B:L.36
- Salt bridges: B:K.149
SO4.15: 2 residues within 4Å:- Chain B: L.142, K.143
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.143
SO4.16: 2 residues within 4Å:- Chain B: S.107, S.108
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.108, B:S.108
SO4.17: 2 residues within 4Å:- Chain B: S.104, T.105
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:T.105, B:T.105
SO4.18: 7 residues within 4Å:- Chain A: K.44, K.82
- Chain B: C.25, R.26, L.27, C.28, F.34
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Water bridges: A:F.42
- Salt bridges: A:K.44, A:K.82
- Hydrogen bonds: B:L.27, B:C.28
- 1 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Silva-Martin, N. et al., Structural Basis for Selective Recognition of Endogenous and Microbial Polysaccharides by Macrophage Receptor Sign-R1. Structure (2014)
- Release Date
- 2014-10-15
- Peptides
- CD209 ANTIGEN-LIKE PROTEIN B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.19 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x CA: CALCIUM ION(Non-covalent)
- 14 x SO4: SULFATE ION(Non-functional Binders)
- 1 x SIA: N-acetyl-alpha-neuraminic acid(Non-covalent)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Silva-Martin, N. et al., Structural Basis for Selective Recognition of Endogenous and Microbial Polysaccharides by Macrophage Receptor Sign-R1. Structure (2014)
- Release Date
- 2014-10-15
- Peptides
- CD209 ANTIGEN-LIKE PROTEIN B: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
D