SMTL ID : 4cav.1

Crystal structure of Aspergillus fumigatus N-myristoyl transferase in complex with myristoyl CoA and a benzofuran ligand R0-09-4879

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.89 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 2 residues within 4Å: Chain A: Y.182 Ligands: 2XQ.2 Ligand excluded by PLIP

1 x 2XQ: 3-[[3-methyl-2-[[2,3,4-tris(fluoranyl)phenoxy]methyl]-1-benzofuran-4-yl]oxy]-N-(pyridin-3-ylmethyl)propan-1-amine(Non-covalent)

2XQ.2: 21 residues within 4Å: Chain A: Y.66, F.74, F.76, Y.78, F.133, Y.182, Y.183, H.184, L.192, V.195, F.197, Y.293, L.295, V.308, Y.312, V.351, N.353, A.354, L.355, L.411 Ligands: CL.1 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:F.133, A:Y.182, A:L.295, A:Y.312, A:N.353, A:L.355, A:L.355, A:L.411 Hydrogen bonds: A:Y.312, A:N.353, A:L.411 pi-Stacking: A:F.74, A:F.76, A:Y.182, A:F.197 Halogen bonds: A:N.353

1 x MYA: TETRADECANOYL-COA(Non-covalent)

MYA.3: 28 residues within 4Å: Chain A: Y.66, V.67, I.131, N.132, F.133, L.134, C.135, I.136, R.141, S.142, K.143, R.144, L.145, T.146, P.147, I.150, T.154, C.157, Y.158, I.162, Y.163, Q.164, A.165, Y.167, T.168, V.171, L.173, Y.381 28 PLIP interactions: 28 interactions with chain A Hydrophobic interactions: A:Y.66, A:I.131, A:I.131, A:I.131, A:L.134, A:I.136, A:I.150, A:I.150, A:Y.158, A:A.165, A:Y.167, A:Y.167, A:Y.381 Hydrogen bonds: A:L.134, A:L.134, A:I.136, A:S.142, A:R.144, A:L.145, A:T.146, A:T.146 Water bridges: A:F.133, A:R.141, A:R.141, A:K.143, A:K.143, A:V.171 Salt bridges: A:R.144

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fang, W. et al., N-Myristoyltransferase is a Cell Wall Target in Aspergillus Fumigatus. Acs Chem.Biol. (2015)

Release Date

2014-09-17

Peptides

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE

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