- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.2: 7 residues within 4Å:- Chain A: W.160, E.251, C.285, T.286, I.437, V.452
- Ligands: GOL.4
2 PLIP interactions:2 interactions with chain A- Water bridges: A:S.446, A:S.446
EDO.10: 6 residues within 4Å:- Chain B: W.160, E.251, T.286, L.414, V.452
- Ligands: GOL.12
2 PLIP interactions:2 interactions with chain B- Water bridges: B:S.446, B:S.446
EDO.18: 5 residues within 4Å:- Chain C: W.160, E.251, L.414, I.437
- Ligands: GOL.23
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:E.251
- Water bridges: C:S.446
EDO.19: 6 residues within 4Å:- Chain C: I.148, G.149, K.175, P.176, S.177, G.208
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:G.149, C:G.149, C:K.175
- Water bridges: C:G.208
- 4 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)
PE4.3: 11 residues within 4Å:- Chain A: S.102, V.103, M.275, F.279, W.443, G.444, E.445
- Chain B: Y.485, A.486, V.488
- Ligands: K.8
1 PLIP interactions:1 interactions with chain A- Water bridges: A:S.446
PE4.11: 10 residues within 4Å:- Chain A: Y.485, A.486, V.488
- Chain B: S.102, V.103, M.275, W.443, G.444, E.445
- Ligands: K.16
No protein-ligand interaction detected (PLIP)PE4.20: 11 residues within 4Å:- Chain C: S.102, V.103, M.275, F.279, W.443, G.444, E.445
- Chain D: Y.485, A.486, V.488
- Ligands: K.26
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:A.486, D:V.488
- Hydrogen bonds: D:Y.485
- Water bridges: C:T.442
PE4.28: 11 residues within 4Å:- Chain C: Y.485, A.486, V.488
- Chain D: S.102, V.103, M.275, F.279, W.443, G.444, E.445
- Ligands: K.32
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrophobic interactions: D:V.103
- Water bridges: D:S.102, D:E.445
- Hydrogen bonds: C:A.486
- 8 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 5 residues within 4Å:- Chain A: Y.153, Q.156, W.160, V.284
- Ligands: EDO.2
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.156, A:T.286
- Water bridges: A:C.285
GOL.5: 7 residues within 4Å:- Chain A: S.19, R.39, A.40, S.41, E.210, V.211, W.214
No protein-ligand interaction detected (PLIP)GOL.12: 6 residues within 4Å:- Chain B: Y.153, Q.156, W.160, V.284, T.286
- Ligands: EDO.10
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:Q.156, B:T.286
- Water bridges: B:T.107, B:N.152
GOL.13: 4 residues within 4Å:- Chain B: F.3, Q.6, L.88, K.186
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:Q.6, B:K.186
- Water bridges: B:E.4, B:Q.6, B:K.186
GOL.21: 4 residues within 4Å:- Chain C: F.3, E.4, Q.6, K.186
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:E.4, C:Q.6, C:K.186
- Water bridges: C:E.4, C:Q.6, C:K.186
GOL.22: 4 residues within 4Å:- Chain C: E.400, A.424, R.425, R.428
6 PLIP interactions:5 interactions with chain C, 1 interactions with chain B- Hydrogen bonds: C:E.400, C:R.425, C:R.428
- Water bridges: C:R.425, C:R.425, B:L.482
GOL.23: 5 residues within 4Å:- Chain C: Y.153, Q.156, W.160, V.284
- Ligands: EDO.18
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:Q.156
- Water bridges: C:C.285
GOL.29: 6 residues within 4Å:- Chain C: E.247, V.248, V.460
- Chain D: E.247, V.248, V.460
5 PLIP interactions:2 interactions with chain C, 3 interactions with chain D- Hydrogen bonds: C:E.247, C:V.248, D:E.247, D:E.247, D:V.248
- 12 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
K.6: 4 residues within 4Å:- Chain A: T.25, I.26, D.92, V.179
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:T.25, A:I.26, A:D.92, A:D.92, A:V.179
K.7: 3 residues within 4Å:- Chain A: K.456, G.459
- Chain B: L.245
5 PLIP interactions:2 interactions with chain A, 1 interactions with chain B, 2 Ligand-Water interactions- Metal complexes: A:K.456, A:G.459, B:L.245, H2O.20, H2O.31
K.8: 1 residues within 4Å:- Ligands: PE4.3
No protein-ligand interaction detected (PLIP)K.14: 4 residues within 4Å:- Chain B: T.25, I.26, D.92, V.179
5 PLIP interactions:4 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:T.25, B:I.26, B:D.92, B:V.179, H2O.23
K.15: 4 residues within 4Å:- Chain A: L.245
- Chain B: K.456, G.459, V.460
5 PLIP interactions:2 interactions with chain B, 1 interactions with chain A, 2 Ligand-Water interactions- Metal complexes: B:K.456, B:G.459, A:L.245, H2O.12, H2O.13
K.16: 1 residues within 4Å:- Ligands: PE4.11
No protein-ligand interaction detected (PLIP)K.24: 4 residues within 4Å:- Chain C: T.25, I.26, D.92, V.179
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:T.25, C:I.26, C:D.92, C:D.92, C:V.179
K.25: 4 residues within 4Å:- Chain C: K.456, G.459, V.460
- Chain D: L.245
5 PLIP interactions:2 interactions with chain C, 1 interactions with chain D, 2 Ligand-Water interactions- Metal complexes: C:K.456, C:G.459, D:L.245, H2O.55, H2O.63
K.26: 1 residues within 4Å:- Ligands: PE4.20
No protein-ligand interaction detected (PLIP)K.30: 4 residues within 4Å:- Chain C: L.245
- Chain D: K.456, G.459, V.460
5 PLIP interactions:2 interactions with chain D, 1 interactions with chain C, 2 Ligand-Water interactions- Metal complexes: D:K.456, D:G.459, C:L.245, H2O.48, H2O.49
K.31: 4 residues within 4Å:- Chain D: T.25, I.26, D.92, V.179
5 PLIP interactions:4 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:I.26, D:D.92, D:D.92, D:V.179, H2O.57
K.32: 1 residues within 4Å:- Ligands: PE4.28
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Diaz-Sanchez, A.G. et al., The Structural Bases of the Dual Coenzyme Specificity of Betaine Aldehyde Dehydrogenase from Pseudomonas Aeruginosa. To be Published
- Release Date
- 2014-10-29
- Peptides
- BETAINE ALDEHYDE DEHYDROGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x DTT: 2,3-DIHYDROXY-1,4-DITHIOBUTANE(Non-covalent)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 4 x PE4: 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}-ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL(Non-functional Binders)
- 8 x GOL: GLYCEROL(Non-functional Binders)
- 12 x K: POTASSIUM ION(Non-covalent)(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Diaz-Sanchez, A.G. et al., The Structural Bases of the Dual Coenzyme Specificity of Betaine Aldehyde Dehydrogenase from Pseudomonas Aeruginosa. To be Published
- Release Date
- 2014-10-29
- Peptides
- BETAINE ALDEHYDE DEHYDROGENASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
EB
FC
GD
H