SMTL ID : 4cd3.1

RnNTPDase2 X4 variant in complex with PSB-071

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.19 Å

Oligo State

monomer

Ligands

2 x 8E9: 1-AMINO-4-(3-METHYLPHENYL)AMINO-9,10-DIOXO-9,10-DIHYDROANTHRACENE-2-SULFONATE(Non-covalent)

8E9.1: 13 residues within 4Å: Chain A: H.45, R.240, D.241, L.244, Q.386, K.387, T.388, R.389, L.390, D.392, Y.393, V.396 Ligands: 8E9.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.244, A:R.389, A:R.389, A:Y.393, A:V.396 Hydrogen bonds: A:R.240, A:R.240, A:T.388, A:R.389, A:Y.393, A:Y.393 pi-Stacking: A:H.45 8E9.2: 9 residues within 4Å: Chain A: H.45, S.47, D.71, R.240, S.341, A.342, Y.345, Y.393 Ligands: 8E9.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.345, A:Y.393 Hydrogen bonds: A:R.240 Salt bridges: A:H.45 pi-Stacking: A:Y.345, A:Y.345

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: F.163, L.221, L.223, N.438, I.443 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.438 Water bridges: A:L.437, A:I.443

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zebisch, M. et al., Crystal Structure of Ntpdase2 in Complex with the Sulfoanthraquinone Inhibitor Psb-071. J.Struct.Biol. (2014)

Release Date

2014-02-12

Peptides

ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ECTONUCLEOSIDE TRIPHOSPHATE DIPHOSPHOHYDROLASE 2