SMTL ID : 4cd5.1

The structure of GH26 beta-mannanase CjMan26C from Cellvibrio japonicus in complex with ManMIm

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

2 x NA: SODIUM ION(Non-functional Binders)

NA.1: 5 residues within 4Å: Chain A: R.76, H.79, S.365, E.366, I.367 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.79, A:I.367 NA.2: 4 residues within 4Å: Chain A: Y.403, Q.404, S.405, V.408 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.408

1 x BMA: beta-D-mannopyranose(Non-covalent)

BMA.3: 8 residues within 4Å: Chain A: L.129, D.130, H.156, W.167, W.373, R.374, Q.385 Ligands: MVL.4 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:D.130, A:W.373, A:R.374, A:Q.385, A:Q.385 Water bridges: A:D.130, A:D.130, A:D.130, A:D.130, A:E.381

1 x MVL: (5R,6R,7S,8R)-5-(HYDROXYMETHYL)-5,6,7,8-TETRAHYDROIMIDAZO[1,2-A]PYRIDINE-6,7,8-TRIOL(Non-covalent)

MVL.4: 10 residues within 4Å: Chain A: H.156, W.167, H.220, E.221, F.227, Y.297, E.338, W.373, Q.385 Ligands: BMA.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.338, A:Q.385 pi-Stacking: A:Y.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Williams, R.J. et al., Combined Inhibitor Free-Energy Landscape and Structural Analysis Reports on the Mannosidase Conformational Coordinate. Angew.Chem.Int.Ed.Engl. (2014)

Release Date

2014-04-02

Peptides

ENDO-1,4-BETA MANNANASE, PUTATIVE, MAN26C: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ENDO-1,4-BETA MANNANASE, PUTATIVE, MAN26C

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