- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.58 Å
- Oligo State
- hetero-3-3-3-mer
- Ligands
- 33 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 18 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: M.70, E.71
- Chain C: R.566
Ligand excluded by PLIPSO4.6: 2 residues within 4Å:- Chain B: L.112, R.116
Ligand excluded by PLIPSO4.17: 2 residues within 4Å:- Chain C: S.204, I.205
Ligand excluded by PLIPSO4.18: 3 residues within 4Å:- Chain C: V.558, K.559, E.560
Ligand excluded by PLIPSO4.19: 5 residues within 4Å:- Chain C: K.511
- Chain F: K.511
- Chain I: K.511
- Ligands: SO4.39, SO4.59
Ligand excluded by PLIPSO4.20: 7 residues within 4Å:- Chain C: H.222, E.223, D.224, H.249, G.280, H.323, R.339
Ligand excluded by PLIPSO4.24: 3 residues within 4Å:- Chain D: M.70, E.71
- Chain F: R.566
Ligand excluded by PLIPSO4.26: 2 residues within 4Å:- Chain E: L.112, R.116
Ligand excluded by PLIPSO4.37: 2 residues within 4Å:- Chain F: S.204, I.205
Ligand excluded by PLIPSO4.38: 3 residues within 4Å:- Chain F: V.558, K.559, E.560
Ligand excluded by PLIPSO4.39: 5 residues within 4Å:- Chain C: K.511
- Chain F: K.511
- Chain I: K.511
- Ligands: SO4.19, SO4.59
Ligand excluded by PLIPSO4.40: 7 residues within 4Å:- Chain F: H.222, E.223, D.224, H.249, G.280, H.323, R.339
Ligand excluded by PLIPSO4.44: 3 residues within 4Å:- Chain G: M.70, E.71
- Chain I: R.566
Ligand excluded by PLIPSO4.46: 2 residues within 4Å:- Chain H: L.112, R.116
Ligand excluded by PLIPSO4.57: 2 residues within 4Å:- Chain I: S.204, I.205
Ligand excluded by PLIPSO4.58: 3 residues within 4Å:- Chain I: V.558, K.559, E.560
Ligand excluded by PLIPSO4.59: 5 residues within 4Å:- Chain C: K.511
- Chain F: K.511
- Chain I: K.511
- Ligands: SO4.19, SO4.39
Ligand excluded by PLIPSO4.60: 7 residues within 4Å:- Chain I: H.222, E.223, D.224, H.249, G.280, H.323, R.339
Ligand excluded by PLIP- 6 x NI: NICKEL (II) ION(Non-covalent)
NI.7: 7 residues within 4Å:- Chain C: K.220, H.222, H.249, H.275, G.280
- Ligands: NI.8, OH.9
4 PLIP interactions:2 interactions with chain C, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: C:H.249, C:H.275, OH.9, H2O.22
NI.8: 6 residues within 4Å:- Chain C: H.137, H.139, K.220, D.363
- Ligands: NI.7, OH.9
5 PLIP interactions:3 interactions with chain C, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: C:H.137, C:H.139, C:D.363, OH.9, H2O.21
NI.27: 7 residues within 4Å:- Chain F: K.220, H.222, H.249, H.275, G.280
- Ligands: NI.28, OH.29
4 PLIP interactions:2 interactions with chain F, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: F:H.249, F:H.275, OH.29, H2O.55
NI.28: 6 residues within 4Å:- Chain F: H.137, H.139, K.220, D.363
- Ligands: NI.27, OH.29
5 PLIP interactions:3 interactions with chain F, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: F:H.137, F:H.139, F:D.363, OH.29, H2O.54
NI.47: 7 residues within 4Å:- Chain I: K.220, H.222, H.249, H.275, G.280
- Ligands: NI.48, OH.49
4 PLIP interactions:2 interactions with chain I, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: I:H.249, I:H.275, OH.49, H2O.88
NI.48: 6 residues within 4Å:- Chain I: H.137, H.139, K.220, D.363
- Ligands: NI.47, OH.49
5 PLIP interactions:3 interactions with chain I, 1 Ligand-Ligand interactions, 1 Ligand-Water interactions- Metal complexes: I:H.137, I:H.139, I:D.363, OH.49, H2O.87
- 3 x OH: HYDROXIDE ION(Non-covalent)
OH.9: 7 residues within 4Å:- Chain C: H.137, K.220, H.275, G.280, D.363
- Ligands: NI.7, NI.8
No protein-ligand interaction detected (PLIP)OH.29: 7 residues within 4Å:- Chain F: H.137, K.220, H.275, G.280, D.363
- Ligands: NI.27, NI.28
No protein-ligand interaction detected (PLIP)OH.49: 7 residues within 4Å:- Chain I: H.137, K.220, H.275, G.280, D.363
- Ligands: NI.47, NI.48
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Benini, S. et al., Fluoride Inhibition of Sporosarcina Pasteurii Urease: Structure and Thermodynamics. J.Biol.Inorg.Chem. (2014)
- Release Date
- 2014-08-27
- Peptides
- UREASE SUBUNIT GAMMA: ADG
UREASE SUBUNIT BETA: BEH
UREASE SUBUNIT ALPHA: CFI - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
AG
AB
BE
BH
BC
CF
CI
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.58 Å
- Oligo State
- hetero-3-3-3-mer
- Ligands
- 33 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- 18 x SO4: SULFATE ION(Non-functional Binders)
- 6 x NI: NICKEL (II) ION(Non-covalent)
- 3 x OH: HYDROXIDE ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Benini, S. et al., Fluoride Inhibition of Sporosarcina Pasteurii Urease: Structure and Thermodynamics. J.Biol.Inorg.Chem. (2014)
- Release Date
- 2014-08-27
- Peptides
- UREASE SUBUNIT GAMMA: ADG
UREASE SUBUNIT BETA: BEH
UREASE SUBUNIT ALPHA: CFI - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AD
AG
AB
BE
BH
BC
CF
CI
C