SMTL ID : 4cid.1

Structural insights into the N-terminus of the EHD2 ATPase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: D.501, D.503, D.505, M.507, L.508, E.512 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.501, A:D.503, A:D.505, A:M.507, A:E.512 CA.4: 6 residues within 4Å: Chain B: D.501, D.503, D.505, M.507, L.508, E.512 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.501, B:D.503, B:D.505, B:M.507, B:E.512

2 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.2: 22 residues within 4Å: Chain A: Q.73, Y.74, S.75, T.76, G.77, K.78, T.79, S.80, V.95, G.96, P.97, P.99, T.100, T.101, G.163, N.226, K.227, M.230, S.263, F.264, W.265 Ligands: MG.3 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.75, A:T.76, A:G.77, A:K.78, A:K.78, A:T.79, A:T.79, A:S.80, A:S.80, A:G.96, A:G.96, A:T.100, A:T.101, A:N.226, A:K.227 pi-Stacking: A:W.265, A:W.265, A:W.265 pi-Cation interactions: A:K.227 ANP.5: 22 residues within 4Å: Chain B: Q.73, Y.74, S.75, T.76, G.77, K.78, T.79, S.80, V.95, G.96, P.97, P.99, T.100, T.101, G.163, N.226, K.227, M.230, S.263, F.264, W.265 Ligands: MG.6 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:S.75, B:T.76, B:G.77, B:K.78, B:K.78, B:T.79, B:T.79, B:S.80, B:S.80, B:G.96, B:G.96, B:T.100, B:T.101, B:T.101, B:N.226, B:K.227 pi-Stacking: B:W.265, B:W.265, B:W.265 pi-Cation interactions: B:K.227

2 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 3 residues within 4Å: Chain A: T.79, T.101 Ligands: ANP.2 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.79, A:T.101 MG.6: 3 residues within 4Å: Chain B: T.79, T.101 Ligands: ANP.5 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.79, B:T.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shah, C. et al., Structural Insights Into Membrane Interaction and Caveolar Targeting of Dynamin-Like Ehd2. Structure (2014)

Release Date

2014-02-19

Peptides

EH DOMAIN-CONTAINING PROTEIN 2: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

EH DOMAIN-CONTAINING PROTEIN 2