Toggle navigation
Modelling
myWorkspace
Alignment Mode
User Template Mode
DeepView Project Mode
Modelling API
Template Library
Repository
SWISS-MODEL Repository
Repository API
3D-Beacons API
Annotation Projects
TBvar3D
Tools
Structure Assessment
Structure Comparison
QMEAN
Documentation
SWISS-MODEL
Examples
Video Tutorial
New Features
SWISS-MODEL Repository
QMEAN
Structure Assessment
Structure Comparison
TBvar3D
Protein Structure Course
References
Log in
Create Account
SMTL ID : 4cjg.1
Spectroscopically validated structure of the 5 coordinate proximal NO adduct of cytochrome c prime from Alcaligenes xylosoxidans
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 1.26 Å
Oligo State
homo-dimer
Ligands
2 x
HEC
:
HEME C
(Covalent)
HEC.1:
23 residues within 4Å:
Chain A:
R.12
,
Q.13
,
L.16
,
T.17
,
M.19
,
A.20
,
F.23
,
W.56
,
F.59
,
G.65
,
G.66
,
D.67
,
A.68
,
I.72
,
F.79
,
K.82
,
Q.83
,
F.86
,
C.116
,
C.119
,
Y.123
,
R.124
Ligands:
NO.2
18
PLIP interactions
:
17 interactions with chain A
,
1 Ligand-Ligand interactions
Hydrophobic interactions:
A:F.23
,
A:W.56
,
A:W.56
,
A:F.59
,
A:I.72
,
A:F.79
,
A:K.82
,
A:Q.83
,
A:F.86
,
A:F.86
,
A:R.124
Hydrogen bonds:
A:Q.13
,
A:T.17
,
A:D.67
,
A:A.68
Water bridges:
A:R.124
Salt bridges:
A:R.12
Metal complexes:
NO.2
HEC.3:
23 residues within 4Å:
Chain B:
R.12
,
Q.13
,
L.16
,
T.17
,
M.19
,
A.20
,
F.23
,
W.56
,
F.59
,
G.65
,
G.66
,
D.67
,
A.68
,
I.72
,
F.79
,
K.82
,
Q.83
,
F.86
,
C.116
,
C.119
,
Y.123
,
R.124
Ligands:
NO.4
20
PLIP interactions
:
19 interactions with chain B
,
1 Ligand-Ligand interactions
Hydrophobic interactions:
B:F.23
,
B:W.56
,
B:W.56
,
B:F.59
,
B:I.72
,
B:F.79
,
B:K.82
,
B:Q.83
,
B:F.86
,
B:F.86
,
B:R.124
Hydrogen bonds:
B:Q.13
,
B:T.17
,
B:T.17
,
B:D.67
,
B:D.67
,
B:A.68
Water bridges:
B:R.124
Salt bridges:
B:R.12
Metal complexes:
NO.4
2 x
NO
:
NITRIC OXIDE
(Non-covalent)
NO.2:
3 residues within 4Å:
Chain A:
H.120
,
R.124
Ligands:
HEC.1
No protein-ligand interaction detected (PLIP)
NO.4:
3 residues within 4Å:
Chain B:
H.120
,
R.124
Ligands:
HEC.3
No protein-ligand interaction detected (PLIP)
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Kekilli, D. et al., Fingerprinting Redox and Ligand States in Haemprotein Crystal Structures Using Resonance Raman Spectroscopy. Acta Crystallogr.,Sect.D (2014)
Release Date
2014-05-21
Peptides
CYTOCHROME C':
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
A
Export Alignment
FASTA format
Clustal Format
PNG Image
Secondary Structure
None
DSSP
PSIPRED
SSpro
Colour Scheme
Fade Mismatches
Enhance Mismatches
Chain
Unique Chain
Rainbow
2° Structure
Bfactor
Bfactor Range
SOA
Entropy
Clustal
Hydrophobic
Size
Charged
Polar
Proline
Ser/Thr
Cysteine
Aliphatic
Aromatic
No Colour
Background
3D Viewer
NGL
PV
2D
FASTA
Multi FASTA
ClustalW
PNG
CYTOCHROME C'
Toggle Identical (AB)
Related Entries With Identical Sequence
1e83.1
|
1e84.1
|
1e85.1
|
1e86.1
|
2xlm.1
|
2yld.1
|
2yli.1
|
3zwi.1
|
4cda.1
|
4cdv.1
|
4cdy.1
|
4cip.1
|
4cjo.1
|
4wgy.1
|
4wgz.1
Cartoon
Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog
Background
Transparent
Resolution
Low
Medium
High
Extreme